* installing *source* package ‘kmeRtone’ ... ** package ‘kmeRtone’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/stringi/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/stringi/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c countKmers.cpp -o countKmers.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/stringi/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c countMidPatternContext.cpp -o countMidPatternContext.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/stringi/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c countMidPatternContext2.cpp -o countMidPatternContext2.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/stringi/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c countMidPatternKmers.cpp -o countMidPatternKmers.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/stringi/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c countMidPatternRangedKmers.cpp -o countMidPatternRangedKmers.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/stringi/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c countPointContext.cpp -o countPointContext.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/stringi/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c countPointContext2.cpp -o countPointContext2.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/stringi/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c countRangedKmers.cpp -o countRangedKmers.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/stringi/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c countSlidingWindow.cpp -o countSlidingWindow.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/stringi/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c countSlidingWindow2.cpp -o countSlidingWindow2.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/stringi/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c count_substring_fixed.cpp -o count_substring_fixed.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/stringi/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c count_substring_regex.cpp -o count_substring_regex.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/stringi/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c import_stringi.cpp -o import_stringi.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/stringi/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c simulatePopulation.cpp -o simulatePopulation.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o kmeRtone.so RcppExports.o countKmers.o countMidPatternContext.o countMidPatternContext2.o countMidPatternKmers.o countMidPatternRangedKmers.o countPointContext.o countPointContext2.o countRangedKmers.o countSlidingWindow.o countSlidingWindow2.o count_substring_fixed.o count_substring_regex.o import_stringi.o simulatePopulation.o /Volumes/Builds/packages/big-sur-arm64/extralib/4.4/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/kmeRtone.Rcheck/00LOCK-kmeRtone/00new/kmeRtone/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kmeRtone)