• using R version 4.4.0 alpha (2024-03-31 r86238)
• using platform: aarch64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.4
• using session charset: UTF-8
• checking for file ‘jointNmix/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘jointNmix’ version ‘1.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘jointNmix’ can be installed ... [1s/1s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [2s/2s] OK
• checking Rd files ... [0s/0s] NOTE checkRd: (-1) jointNmix.Rd:30: Lost braces; missing escapes or markup?     30 | The function fits a bivariate extension to Royle's (2004) N-mixture model to data on the abundance of two species collected at R sites over T time occasions. The model for observation on site i at time t for species 1 can be specified as \deqn{Y_{1it}|N_{1i} ~ Bin(N_{1i},p_{1it})}\deqn{N_{1i} ~ a count distribution with mean \lambda_{1i}.} The model for species 2 is \deqn{Y_{2it}|N_{1i},N_{2i} ~ Bin(N_{2i},p_{2it})}\deqn{N_{2i}|N_{1i} ~ a count distribution with mean \psi+\lambda_{2i}N_{1i}.} Here, users may define a Poisson or negative binomial distribution for the latent abundances N_{1i} and N_{2i}.        | ^ checkRd: (-1) jointNmix.Rd:30: Lost braces; missing escapes or markup?     30 | The function fits a bivariate extension to Royle's (2004) N-mixture model to data on the abundance of two species collected at R sites over T time occasions. The model for observation on site i at time t for species 1 can be specified as \deqn{Y_{1it}|N_{1i} ~ Bin(N_{1i},p_{1it})}\deqn{N_{1i} ~ a count distribution with mean \lambda_{1i}.} The model for species 2 is \deqn{Y_{2it}|N_{1i},N_{2i} ~ Bin(N_{2i},p_{2it})}\deqn{N_{2i}|N_{1i} ~ a count distribution with mean \psi+\lambda_{2i}N_{1i}.} Here, users may define a Poisson or negative binomial distribution for the latent abundances N_{1i} and N_{2i}.        | ^
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [1s/1s] OK
• checking PDF version of manual ... [4s/4s] OK
• DONE Status: 1 NOTE
• using check arguments '--no-clean-on-error '