* using log directory ‘/Volumes/Builds/packages/big-sur-arm64/results/4.4/gstat.Rcheck’ * using R version 4.4.0 alpha (2024-03-31 r86238) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.4 * using session charset: UTF-8 * checking for file ‘gstat/DESCRIPTION’ ... OK * this is package ‘gstat’ version ‘2.1-1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘gstat’ can be installed ... [9s/10s] OK See 'https://www.r-project.org/nosvn/R.check/r-release-macos-arm64/gstat-00install.html' for details. * used C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ * used SDK: ‘MacOSX11.3.sdk’ * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s/5s] OK * checking Rd files ... [0s/0s] NOTE checkRd: (-1) jura.Rd:29: Lost braces; missing escapes or markup? 29 | \item{Cd}{ mg cadmium kg^{-1} topsoil } | ^ checkRd: (-1) jura.Rd:30: Lost braces; missing escapes or markup? 30 | \item{Co}{ mg cobalt kg^{-1} topsoil } | ^ checkRd: (-1) jura.Rd:31: Lost braces; missing escapes or markup? 31 | \item{Cr}{ mg chromium kg^{-1} topsoil } | ^ checkRd: (-1) jura.Rd:32: Lost braces; missing escapes or markup? 32 | \item{Cu}{ mg copper kg^{-1} topsoil } | ^ checkRd: (-1) jura.Rd:33: Lost braces; missing escapes or markup? 33 | \item{Ni}{ mg nickel kg^{-1} topsoil } | ^ checkRd: (-1) jura.Rd:34: Lost braces; missing escapes or markup? 34 | \item{Pb}{ mg lead kg^{-1} topsoil } | ^ checkRd: (-1) jura.Rd:35: Lost braces; missing escapes or markup? 35 | \item{Zn}{ mg zinc kg^{-1} topsoil } | ^ checkRd: (-1) variogramST.Rd:49: Lost braces; missing escapes or markup? 49 | time lag $t$, the pseudo cross variogram $(Z_i(s)-Z_{i+t}(s+h))^2$ is averaged over all time | ^ checkRd: (-1) variogramST.Rd:50: Lost braces; missing escapes or markup? 50 | lagged observation sets $Z_i$ and $Z_{i+t}$ available (weighted by the number of pairs involved). | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [1s/1s] OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [5s/5s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [23s/24s] OK Running ‘allier.R’ [1s/1s] Comparing ‘allier.Rout’ to ‘allier.Rout.save’ ... OK Running ‘blockkr.R’ [1s/1s] Comparing ‘blockkr.Rout’ to ‘blockkr.Rout.save’ ... OK Running ‘covtable.R’ [1s/1s] Comparing ‘covtable.Rout’ to ‘covtable.Rout.save’ ... OK Running ‘cv.R’ [1s/1s] Comparing ‘cv.Rout’ to ‘cv.Rout.save’ ... OK Running ‘cv3d.R’ [1s/1s] Comparing ‘cv3d.Rout’ to ‘cv3d.Rout.save’ ... OK Running ‘fit.R’ [1s/1s] Comparing ‘fit.Rout’ to ‘fit.Rout.save’ ... OK Running ‘krige0.R’ [2s/2s] Comparing ‘krige0.Rout’ to ‘krige0.Rout.save’ ... OK Running ‘line.R’ [1s/1s] Comparing ‘line.Rout’ to ‘line.Rout.save’ ... OK Running ‘merge.R’ [1s/1s] Comparing ‘merge.Rout’ to ‘merge.Rout.save’ ... OK Running ‘na.action.R’ [1s/1s] Comparing ‘na.action.Rout’ to ‘na.action.Rout.save’ ... OK Running ‘rings.R’ [1s/1s] Comparing ‘rings.Rout’ to ‘rings.Rout.save’ ... OK Running ‘sim.R’ [1s/1s] Comparing ‘sim.Rout’ to ‘sim.Rout.save’ ... OK Running ‘stars.R’ [5s/5s] Comparing ‘stars.Rout’ to ‘stars.Rout.save’ ...16c16 < > crs = CRS("EPSG:28992") --- > > crs = CRS("+init=epsg:28992") 66c66 < > crs = CRS("EPSG:28992") --- > > crs = CRS("+init=epsg:28992") 107a108,110 > [4] "Attributes: < Component \"proj4string\": Attributes: < Names: 1 string mismatch > >" > [5] "Attributes: < Component \"proj4string\": Attributes: < Length mismatch: comparison on first 2 components > >" > [6] "Attributes: < Component \"proj4string\": Attributes: < Component 2: 1 string mismatch > >" 112a116,118 > Warning message: > In CPL_crs_from_input(x) : > GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. 115c121 < User input: Amersfoort / RD New --- > User input: +init=epsg:28992 142c148,149 < ID["EPSG",8807]]], --- > ID["EPSG",8807]], > ID["EPSG",19914]], 144c151 < AXIS["easting (X)",east, --- > AXIS["(E)",east, 146,147c153,155 < LENGTHUNIT["metre",1]], < AXIS["northing (Y)",north, --- > LENGTHUNIT["metre",1, > ID["EPSG",9001]]], > AXIS["(N)",north, 149c157,158 < LENGTHUNIT["metre",1]], --- > LENGTHUNIT["metre",1, > ID["EPSG",9001]]], 151c160 < SCOPE["Engineering survey, topographic mapping."], --- > SCOPE["unknown"], 153,154c162 < BBOX[50.75,3.2,53.7,7.22]], < ID["EPSG",28992]] --- > BBOX[50.75,3.2,53.7,7.22]]] 169a178,180 > [8] "Attributes: < Component 5: Attributes: < Names: 1 string mismatch > >" > [9] "Attributes: < Component 5: Attributes: < Length mismatch: comparison on first 2 components > >" > [10] "Attributes: < Component 5: Attributes: < Component 2: 1 string mismatch > >" 247c258 < time 1 4 2019-02-26 04:37:25 NZDT 1 secs POSIXct --- > time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 251,314c262,325 < 1 10.25 -0.35 2019-02-26 04:37:25 1 < 2 10.75 -0.35 2019-02-26 04:37:25 2 < 3 11.25 -0.35 2019-02-26 04:37:25 3 < 4 11.75 -0.35 2019-02-26 04:37:25 4 < 5 10.25 -1.05 2019-02-26 04:37:25 5 < 6 10.75 -1.05 2019-02-26 04:37:25 6 < 7 11.25 -1.05 2019-02-26 04:37:25 7 < 8 11.75 -1.05 2019-02-26 04:37:25 8 < 9 10.25 -1.75 2019-02-26 04:37:25 9 < 10 10.75 -1.75 2019-02-26 04:37:25 10 < 11 11.25 -1.75 2019-02-26 04:37:25 11 < 12 11.75 -1.75 2019-02-26 04:37:25 12 < 13 10.25 -2.45 2019-02-26 04:37:25 13 < 14 10.75 -2.45 2019-02-26 04:37:25 14 < 15 11.25 -2.45 2019-02-26 04:37:25 15 < 16 11.75 -2.45 2019-02-26 04:37:25 16 < 17 10.25 -0.35 2019-02-26 04:37:26 17 < 18 10.75 -0.35 2019-02-26 04:37:26 18 < 19 11.25 -0.35 2019-02-26 04:37:26 19 < 20 11.75 -0.35 2019-02-26 04:37:26 20 < 21 10.25 -1.05 2019-02-26 04:37:26 21 < 22 10.75 -1.05 2019-02-26 04:37:26 22 < 23 11.25 -1.05 2019-02-26 04:37:26 23 < 24 11.75 -1.05 2019-02-26 04:37:26 24 < 25 10.25 -1.75 2019-02-26 04:37:26 25 < 26 10.75 -1.75 2019-02-26 04:37:26 26 < 27 11.25 -1.75 2019-02-26 04:37:26 27 < 28 11.75 -1.75 2019-02-26 04:37:26 28 < 29 10.25 -2.45 2019-02-26 04:37:26 29 < 30 10.75 -2.45 2019-02-26 04:37:26 30 < 31 11.25 -2.45 2019-02-26 04:37:26 31 < 32 11.75 -2.45 2019-02-26 04:37:26 32 < 33 10.25 -0.35 2019-02-26 04:37:27 33 < 34 10.75 -0.35 2019-02-26 04:37:27 34 < 35 11.25 -0.35 2019-02-26 04:37:27 35 < 36 11.75 -0.35 2019-02-26 04:37:27 36 < 37 10.25 -1.05 2019-02-26 04:37:27 37 < 38 10.75 -1.05 2019-02-26 04:37:27 38 < 39 11.25 -1.05 2019-02-26 04:37:27 39 < 40 11.75 -1.05 2019-02-26 04:37:27 40 < 41 10.25 -1.75 2019-02-26 04:37:27 41 < 42 10.75 -1.75 2019-02-26 04:37:27 42 < 43 11.25 -1.75 2019-02-26 04:37:27 43 < 44 11.75 -1.75 2019-02-26 04:37:27 44 < 45 10.25 -2.45 2019-02-26 04:37:27 45 < 46 10.75 -2.45 2019-02-26 04:37:27 46 < 47 11.25 -2.45 2019-02-26 04:37:27 47 < 48 11.75 -2.45 2019-02-26 04:37:27 48 < 49 10.25 -0.35 2019-02-26 04:37:28 49 < 50 10.75 -0.35 2019-02-26 04:37:28 50 < 51 11.25 -0.35 2019-02-26 04:37:28 51 < 52 11.75 -0.35 2019-02-26 04:37:28 52 < 53 10.25 -1.05 2019-02-26 04:37:28 53 < 54 10.75 -1.05 2019-02-26 04:37:28 54 < 55 11.25 -1.05 2019-02-26 04:37:28 55 < 56 11.75 -1.05 2019-02-26 04:37:28 56 < 57 10.25 -1.75 2019-02-26 04:37:28 57 < 58 10.75 -1.75 2019-02-26 04:37:28 58 < 59 11.25 -1.75 2019-02-26 04:37:28 59 < 60 11.75 -1.75 2019-02-26 04:37:28 60 < 61 10.25 -2.45 2019-02-26 04:37:28 61 < 62 10.75 -2.45 2019-02-26 04:37:28 62 < 63 11.25 -2.45 2019-02-26 04:37:28 63 < 64 11.75 -2.45 2019-02-26 04:37:28 64 --- > 1 10.25 -0.35 2019-02-25 15:37:25 1 > 2 10.75 -0.35 2019-02-25 15:37:25 2 > 3 11.25 -0.35 2019-02-25 15:37:25 3 > 4 11.75 -0.35 2019-02-25 15:37:25 4 > 5 10.25 -1.05 2019-02-25 15:37:25 5 > 6 10.75 -1.05 2019-02-25 15:37:25 6 > 7 11.25 -1.05 2019-02-25 15:37:25 7 > 8 11.75 -1.05 2019-02-25 15:37:25 8 > 9 10.25 -1.75 2019-02-25 15:37:25 9 > 10 10.75 -1.75 2019-02-25 15:37:25 10 > 11 11.25 -1.75 2019-02-25 15:37:25 11 > 12 11.75 -1.75 2019-02-25 15:37:25 12 > 13 10.25 -2.45 2019-02-25 15:37:25 13 > 14 10.75 -2.45 2019-02-25 15:37:25 14 > 15 11.25 -2.45 2019-02-25 15:37:25 15 > 16 11.75 -2.45 2019-02-25 15:37:25 16 > 17 10.25 -0.35 2019-02-25 15:37:26 17 > 18 10.75 -0.35 2019-02-25 15:37:26 18 > 19 11.25 -0.35 2019-02-25 15:37:26 19 > 20 11.75 -0.35 2019-02-25 15:37:26 20 > 21 10.25 -1.05 2019-02-25 15:37:26 21 > 22 10.75 -1.05 2019-02-25 15:37:26 22 > 23 11.25 -1.05 2019-02-25 15:37:26 23 > 24 11.75 -1.05 2019-02-25 15:37:26 24 > 25 10.25 -1.75 2019-02-25 15:37:26 25 > 26 10.75 -1.75 2019-02-25 15:37:26 26 > 27 11.25 -1.75 2019-02-25 15:37:26 27 > 28 11.75 -1.75 2019-02-25 15:37:26 28 > 29 10.25 -2.45 2019-02-25 15:37:26 29 > 30 10.75 -2.45 2019-02-25 15:37:26 30 > 31 11.25 -2.45 2019-02-25 15:37:26 31 > 32 11.75 -2.45 2019-02-25 15:37:26 32 > 33 10.25 -0.35 2019-02-25 15:37:27 33 > 34 10.75 -0.35 2019-02-25 15:37:27 34 > 35 11.25 -0.35 2019-02-25 15:37:27 35 > 36 11.75 -0.35 2019-02-25 15:37:27 36 > 37 10.25 -1.05 2019-02-25 15:37:27 37 > 38 10.75 -1.05 2019-02-25 15:37:27 38 > 39 11.25 -1.05 2019-02-25 15:37:27 39 > 40 11.75 -1.05 2019-02-25 15:37:27 40 > 41 10.25 -1.75 2019-02-25 15:37:27 41 > 42 10.75 -1.75 2019-02-25 15:37:27 42 > 43 11.25 -1.75 2019-02-25 15:37:27 43 > 44 11.75 -1.75 2019-02-25 15:37:27 44 > 45 10.25 -2.45 2019-02-25 15:37:27 45 > 46 10.75 -2.45 2019-02-25 15:37:27 46 > 47 11.25 -2.45 2019-02-25 15:37:27 47 > 48 11.75 -2.45 2019-02-25 15:37:27 48 > 49 10.25 -0.35 2019-02-25 15:37:28 49 > 50 10.75 -0.35 2019-02-25 15:37:28 50 > 51 11.25 -0.35 2019-02-25 15:37:28 51 > 52 11.75 -0.35 2019-02-25 15:37:28 52 > 53 10.25 -1.05 2019-02-25 15:37:28 53 > 54 10.75 -1.05 2019-02-25 15:37:28 54 > 55 11.25 -1.05 2019-02-25 15:37:28 55 > 56 11.75 -1.05 2019-02-25 15:37:28 56 > 57 10.25 -1.75 2019-02-25 15:37:28 57 > 58 10.75 -1.75 2019-02-25 15:37:28 58 > 59 11.25 -1.75 2019-02-25 15:37:28 59 > 60 11.75 -1.75 2019-02-25 15:37:28 60 > 61 10.25 -2.45 2019-02-25 15:37:28 61 > 62 10.75 -2.45 2019-02-25 15:37:28 62 > 63 11.25 -2.45 2019-02-25 15:37:28 63 > 64 11.75 -2.45 2019-02-25 15:37:28 64 413,416c424,427 < 2019-02-26 04:37:25 1 < 2019-02-26 04:37:26 2 < 2019-02-26 04:37:27 3 < 2019-02-26 04:37:28 4 --- > 2019-02-25 15:37:25 1 > 2019-02-25 15:37:26 2 > 2019-02-25 15:37:27 3 > 2019-02-25 15:37:28 4 419,420c430,431 < [1] "2019-02-26 04:37:26 NZDT" "2019-02-26 04:37:27 NZDT" < [3] "2019-02-26 04:37:28 NZDT" "2019-02-26 04:37:29 NZDT" --- > [1] "2019-02-25 15:37:26 UTC" "2019-02-25 15:37:27 UTC" > [3] "2019-02-25 15:37:28 UTC" "2019-02-25 15:37:29 UTC" 432,433c443,444 < y 1 4 -1.11e-16 -0.7 NA [y] < time 1 4 2019-02-26 04:37:25 NZDT 1 secs POSIXct --- > y 1 4 -1.11022e-16 -0.7 NA [y] > time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct Running ‘unproj.R’ [2s/2s] Comparing ‘unproj.Rout’ to ‘unproj.Rout.save’ ...60c60 < Spam version 2.10-0 (2023-10-23) is loaded. --- > Spam version 2.9-1 (2022-08-07) is loaded. 74c74 < Linking to GEOS 3.11.0, GDAL 3.5.3, PROJ 9.1.0; sf_use_s2() is TRUE --- > Linking to GEOS 3.11.1, GDAL 3.6.2, PROJ 9.1.1; sf_use_s2() is TRUE Running ‘variogram.R’ [1s/1s] Comparing ‘variogram.Rout’ to ‘variogram.Rout.save’ ... OK Running ‘vdist.R’ [1s/1s] Comparing ‘vdist.Rout’ to ‘vdist.Rout.save’ ...23c23 < 1500 (180260, 331300) 5.647694 1.100095 --- > 1500 (180260, 331300) 5.50671 1.100095 Running ‘windst.R’ [3s/3s] Comparing ‘windst.Rout’ to ‘windst.Rout.save’ ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [27s/29s] OK * checking PDF version of manual ... [7s/7s] OK * DONE Status: 1 NOTE * using check arguments '--no-clean-on-error ' * elapsed time (check, wall clock): 1:46