- using R version 4.5.0 beta (2025-03-29 r88069)
- using platform: aarch64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
- running under: macOS Ventura 13.4
- using session charset: UTF-8
- checking for file ‘frailtyMMpen/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘frailtyMMpen’ version ‘1.2.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘frailtyMMpen’ can be installed ... [10s/13s] OK
See the install log for details.
- used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
- used SDK: ‘MacOSX11.3.sdk’
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking whether startup messages can be suppressed ... [1s/1s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [3s/4s] OK
- checking Rd files ... [0s/0s] NOTE
checkRd: (-1) frailtyMM.Rd:71: Lost braces
71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
98 | \if{latex}{\out{\begin{center}}{\figure{fig8.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:103: Lost braces
103 | \if{latex}{\out{\begin{center}}{\figure{fig9.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:108: Lost braces
108 | \if{latex}{\out{\begin{center}}{\figure{fig10.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:113: Lost braces
113 | \if{latex}{\out{\begin{center}}{\figure{fig11.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:118: Lost braces
118 | \if{latex}{\out{\begin{center}}{\figure{fig12.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:123: Lost braces
123 | \if{latex}{\out{\begin{center}}{\figure{fig13.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:128: Lost braces
128 | \if{latex}{\out{\begin{center}}{\figure{fig14.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMM.Rd:136: Lost braces; missing escapes or markup?
136 | is fitted, please use {1,2...,K} to denote the event id from the input data. To run the recurrent event model,
| ^
checkRd: (-1) frailtyMM.Rd:50: Lost braces; missing escapes or markup?
50 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
| ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
84 | \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
89 | \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
94 | \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
| ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
| ^
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking compiled code ... OK
- checking examples ... [2s/2s] OK
- checking PDF version of manual ... [6s/7s] OK
- DONE
Status: 1 NOTE
- using check arguments '--no-clean-on-error '