• using R version 4.4.0 alpha (2024-03-31 r86238)
• using platform: aarch64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.4
• using session charset: UTF-8
• checking for file ‘dnapath/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘dnapath’ version ‘0.7.4’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... NOTE Package suggested but not available for checking: ‘reactome.db’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘dnapath’ can be installed ... [8s/12s] OK See the install log for details.
• used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
• used SDK: ‘MacOSX11.3.sdk’
• checking C++ specification ... NOTE   Specified C++11: please drop specification unless essential
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/3s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... NOTE Invalid package aliases in Rd file 'dnapath2-package.Rd':   ‘dnapath2-package’
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... NOTE Auto-generated content requiring editing in Rd file 'dnapath2-package.Rd':   \references: ‘This optional section can contain literature or other refere...’   \seealso: ‘Optional links to other man pages’   \examples: ‘\dontrun{ ## Optional simple examples of the most impor...’
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [14s/15s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [3s/4s] OK   Running ‘testthat.R’ [3s/4s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [25s/55s] OK
• checking PDF version of manual ... [5s/5s] OK
• DONE Status: 4 NOTEs
• using check arguments '--no-clean-on-error '