Check results for 'distfreereg'

using R version 4.4.1 (2024-06-14)
using platform: aarch64-apple-darwin20
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0
running under: macOS Ventura 13.4
using session charset: UTF-8
checking for file ‘distfreereg/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘distfreereg’ version ‘1.0.1’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘distfreereg’ can be installed ... [2s/2s] OK See the install log for details.
checking installed package size ... OK
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [0s/0s] OK
checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
checking whether the package can be unloaded cleanly ... [0s/0s] OK
checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
checking loading without being on the library search path ... [0s/0s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [3s/3s] OK
checking Rd files ... [0s/0s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [3s/3s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [139s/149s] OK Running ‘0_aggregator_matrix.R’ [0s/0s] Comparing ‘0_aggregator_matrix.Rout’ to ‘0_aggregator_matrix.Rout.save’ ... OK Running ‘0_combine_dfr_arg_lists_test.R’ [0s/0s] Comparing ‘0_combine_dfr_arg_lists_test.Rout’ to ‘0_combine_dfr_arg_lists_test.Rout.save’ ... OK Running ‘0_combine_lists_test.R’ [0s/0s] Comparing ‘0_combine_lists_test.Rout’ to ‘0_combine_lists_test.Rout.save’ ... OK Running ‘0_fill_covariance_list_test_01_matrix.R’ [0s/0s] Comparing ‘0_fill_covariance_list_test_01_matrix.Rout’ to ‘0_fill_covariance_list_test_01_matrix.Rout.save’ ... OK Running ‘0_fill_covariance_list_test_02_number.R’ [0s/0s] Comparing ‘0_fill_covariance_list_test_02_number.Rout’ to ‘0_fill_covariance_list_test_02_number.Rout.save’ ... OK Running ‘0_fill_covariance_list_test_03_vector.R’ [0s/0s] Comparing ‘0_fill_covariance_list_test_03_vector.Rout’ to ‘0_fill_covariance_list_test_03_vector.Rout.save’ ... OK Running ‘0_is_named_list_test.R’ [0s/0s] Comparing ‘0_is_named_list_test.Rout’ to ‘0_is_named_list_test.Rout.save’ ... OK Running ‘0_matrix_functions_test.R’ [0s/0s] Comparing ‘0_matrix_functions_test.Rout’ to ‘0_matrix_functions_test.Rout.save’ ... OK Running ‘0_scale_to_01_test.R’ [0s/0s] Comparing ‘0_scale_to_01_test.Rout’ to ‘0_scale_to_01_test.Rout.save’ ... OK Running ‘0_upstar_test.R’ [1s/1s] Comparing ‘0_upstar_test.Rout’ to ‘0_upstar_test.Rout.save’ ... OK Running ‘1_distfreereg_test_01_basic.R’ [2s/2s] Comparing ‘1_distfreereg_test_01_basic.Rout’ to ‘1_distfreereg_test_01_basic.Rout.save’ ... OK Running ‘1_distfreereg_test_02_X_NULL.R’ [0s/1s] Comparing ‘1_distfreereg_test_02_X_NULL.Rout’ to ‘1_distfreereg_test_02_X_NULL.Rout.save’ ... OK Running ‘1_distfreereg_test_03_override_default.R’ [2s/2s] Comparing ‘1_distfreereg_test_03_override_default.Rout’ to ‘1_distfreereg_test_03_override_default.Rout.save’ ... OK Running ‘1_distfreereg_test_04_override_formula.R’ [3s/3s] Comparing ‘1_distfreereg_test_04_override_formula.Rout’ to ‘1_distfreereg_test_04_override_formula.Rout.save’ ... OK Running ‘1_distfreereg_test_05_override_function.R’ [2s/3s] Comparing ‘1_distfreereg_test_05_override_function.Rout’ to ‘1_distfreereg_test_05_override_function.Rout.save’ ... OK Running ‘1_distfreereg_test_06_override_lm.R’ [2s/2s] Comparing ‘1_distfreereg_test_06_override_lm.Rout’ to ‘1_distfreereg_test_06_override_lm.Rout.save’ ... OK Running ‘1_distfreereg_test_07_override_errors.R’ [0s/0s] Comparing ‘1_distfreereg_test_07_override_errors.Rout’ to ‘1_distfreereg_test_07_override_errors.Rout.save’ ... OK Running ‘1_distfreereg_test_08_external_f.R’ [1s/1s] Comparing ‘1_distfreereg_test_08_external_f.Rout’ to ‘1_distfreereg_test_08_external_f.Rout.save’ ... OK Running ‘1_distfreereg_test_09_ordering.R’ [8s/8s] Comparing ‘1_distfreereg_test_09_ordering.Rout’ to ‘1_distfreereg_test_09_ordering.Rout.save’ ... OK Running ‘1_distfreereg_test_10_ordering_errors.R’ [0s/0s] Comparing ‘1_distfreereg_test_10_ordering_errors.Rout’ to ‘1_distfreereg_test_10_ordering_errors.Rout.save’ ... OK Running ‘1_distfreereg_test_11_test_f_errors.R’ [0s/0s] Comparing ‘1_distfreereg_test_11_test_f_errors.Rout’ to ‘1_distfreereg_test_11_test_f_errors.Rout.save’ ... OK Running ‘1_distfreereg_test_12_update_function.R’ [3s/4s] Comparing ‘1_distfreereg_test_12_update_function.Rout’ to ‘1_distfreereg_test_12_update_function.Rout.save’ ... OK Running ‘1_distfreereg_test_13_predict.R’ [2s/2s] Comparing ‘1_distfreereg_test_13_predict.Rout’ to ‘1_distfreereg_test_13_predict.Rout.save’ ... OK Running ‘1_distfreereg_test_14_B.R’ [0s/0s] Comparing ‘1_distfreereg_test_14_B.Rout’ to ‘1_distfreereg_test_14_B.Rout.save’ ... OK Running ‘1_distfreereg_test_15_plot.R’ [1s/2s] Comparing ‘1_distfreereg_test_15_plot.Rout’ to ‘1_distfreereg_test_15_plot.Rout.save’ ... OK Running ‘1_distfreereg_test_16_stat_function_errors.R’ [0s/0s] Comparing ‘1_distfreereg_test_16_stat_function_errors.Rout’ to ‘1_distfreereg_test_16_stat_function_errors.Rout.save’ ... OK Running ‘1_distfreereg_test_17_covariance.R’ [2s/2s] Comparing ‘1_distfreereg_test_17_covariance.Rout’ to ‘1_distfreereg_test_17_covariance.Rout.save’ ... OK Running ‘1_distfreereg_test_18_optimization.R’ [1s/1s] Comparing ‘1_distfreereg_test_18_optimization.Rout’ to ‘1_distfreereg_test_18_optimization.Rout.save’ ... OK Running ‘1_distfreereg_test_19_symmetric.R’ [1s/1s] Comparing ‘1_distfreereg_test_19_symmetric.Rout’ to ‘1_distfreereg_test_19_symmetric.Rout.save’ ... OK Running ‘1_distfreereg_test_20_formula_method.R’ [0s/0s] Comparing ‘1_distfreereg_test_20_formula_method.Rout’ to ‘1_distfreereg_test_20_formula_method.Rout.save’ ... OK Running ‘1_distfreereg_test_21_update_default.R’ [1s/1s] Comparing ‘1_distfreereg_test_21_update_default.Rout’ to ‘1_distfreereg_test_21_update_default.Rout.save’ ... OK Running ‘1_distfreereg_test_22_extra_argument_detection.R’ [0s/0s] Comparing ‘1_distfreereg_test_22_extra_argument_detection.Rout’ to ‘1_distfreereg_test_22_extra_argument_detection.Rout.save’ ... OK Running ‘1_distfreereg_test_23_lm_method.R’ [0s/0s] Comparing ‘1_distfreereg_test_23_lm_method.Rout’ to ‘1_distfreereg_test_23_lm_method.Rout.save’ ... OK Running ‘1_distfreereg_test_24_update_formula.R’ [2s/2s] Comparing ‘1_distfreereg_test_24_update_formula.Rout’ to ‘1_distfreereg_test_24_update_formula.Rout.save’ ... OK Running ‘1_distfreereg_test_25_update_lm.R’ [2s/2s] Comparing ‘1_distfreereg_test_25_update_lm.Rout’ to ‘1_distfreereg_test_25_update_lm.Rout.save’ ... OK Running ‘1_distfreereg_test_26_update_default.R’ [5s/5s] Comparing ‘1_distfreereg_test_26_update_default.Rout’ to ‘1_distfreereg_test_26_update_default.Rout.save’ ... OK Running ‘1_distfreereg_test_27_update_formula.R’ [4s/4s] Comparing ‘1_distfreereg_test_27_update_formula.Rout’ to ‘1_distfreereg_test_27_update_formula.Rout.save’ ... OK Running ‘1_distfreereg_test_28_update_function.R’ [4s/4s] Comparing ‘1_distfreereg_test_28_update_function.Rout’ to ‘1_distfreereg_test_28_update_function.Rout.save’ ... OK Running ‘1_distfreereg_test_29_update_lm.R’ [3s/3s] Comparing ‘1_distfreereg_test_29_update_lm.Rout’ to ‘1_distfreereg_test_29_update_lm.Rout.save’ ... OK Running ‘1_distfreereg_test_30_group.R’ [4s/4s] Comparing ‘1_distfreereg_test_30_group.Rout’ to ‘1_distfreereg_test_30_group.Rout.save’ ... OK Running ‘1_distfreereg_test_31_formula_nls.R’ [1s/1s] Comparing ‘1_distfreereg_test_31_formula_nls.Rout’ to ‘1_distfreereg_test_31_formula_nls.Rout.save’ ... OK Running ‘1_distfreereg_test_32_coef_method.R’ [2s/2s] Comparing ‘1_distfreereg_test_32_coef_method.Rout’ to ‘1_distfreereg_test_32_coef_method.Rout.save’ ... OK Running ‘1_distfreereg_test_33_formula_method.R’ [2s/2s] Comparing ‘1_distfreereg_test_33_formula_method.Rout’ to ‘1_distfreereg_test_33_formula_method.Rout.save’ ... OK Running ‘1_distfreereg_test_34_formula_response_single_term.R’ [0s/0s] Comparing ‘1_distfreereg_test_34_formula_response_single_term.Rout’ to ‘1_distfreereg_test_34_formula_response_single_term.Rout.save’ ... OK Running ‘1_distfreereg_test_35_nls_diagonal_covariance.R’ [0s/0s] Comparing ‘1_distfreereg_test_35_nls_diagonal_covariance.Rout’ to ‘1_distfreereg_test_35_nls_diagonal_covariance.Rout.save’ ... OK Running ‘1_distfreereg_test_36_covariance_matrix_num_vec_comparison.R’ [2s/2s] Comparing ‘1_distfreereg_test_36_covariance_matrix_num_vec_comparison.Rout’ to ‘1_distfreereg_test_36_covariance_matrix_num_vec_comparison.Rout.save’ ... OK Running ‘1_distfreereg_test_37_covariance_forms.R’ [1s/1s] Comparing ‘1_distfreereg_test_37_covariance_forms.Rout’ to ‘1_distfreereg_test_37_covariance_forms.Rout.save’ ... OK Running ‘1_distfreereg_test_38_vcov.R’ [9s/10s] Comparing ‘1_distfreereg_test_38_vcov.Rout’ to ‘1_distfreereg_test_38_vcov.Rout.save’ ... OK Running ‘1_distfreereg_test_39_confint.R’ [9s/10s] Comparing ‘1_distfreereg_test_39_confint.Rout’ to ‘1_distfreereg_test_39_confint.Rout.save’ ... OK Running ‘1_distfreereg_test_40_uppercase_X.R’ [1s/1s] Comparing ‘1_distfreereg_test_40_uppercase_X.Rout’ to ‘1_distfreereg_test_40_uppercase_X.Rout.save’ ... OK Running ‘2_compare_test_01_a_a_basic_tests_func_func.R’ [0s/0s] Comparing ‘2_compare_test_01_a_a_basic_tests_func_func.Rout’ to ‘2_compare_test_01_a_a_basic_tests_func_func.Rout.save’ ... OK Running ‘2_compare_test_01_a_b_basic_tests_func_formlm.R’ [0s/0s] Comparing ‘2_compare_test_01_a_b_basic_tests_func_formlm.Rout’ to ‘2_compare_test_01_a_b_basic_tests_func_formlm.Rout.save’ ... OK Running ‘2_compare_test_01_a_c_basic_tests_func_formnls.R’ [0s/0s] Comparing ‘2_compare_test_01_a_c_basic_tests_func_formnls.Rout’ to ‘2_compare_test_01_a_c_basic_tests_func_formnls.Rout.save’ ... OK Running ‘2_compare_test_01_a_d_basic_tests_func_lm.R’ [0s/0s] Comparing ‘2_compare_test_01_a_d_basic_tests_func_lm.Rout’ to ‘2_compare_test_01_a_d_basic_tests_func_lm.Rout.save’ ... OK Running ‘2_compare_test_01_a_e_basic_tests_func_nls.R’ [0s/0s] Comparing ‘2_compare_test_01_a_e_basic_tests_func_nls.Rout’ to ‘2_compare_test_01_a_e_basic_tests_func_nls.Rout.save’ ... OK Running ‘2_compare_test_01_b_a_basic_tests_formlm_func.R’ [0s/0s] Comparing ‘2_compare_test_01_b_a_basic_tests_formlm_func.Rout’ to ‘2_compare_test_01_b_a_basic_tests_formlm_func.Rout.save’ ... OK Running ‘2_compare_test_01_b_b_basic_tests_formlm_formlm.R’ [0s/0s] Comparing ‘2_compare_test_01_b_b_basic_tests_formlm_formlm.Rout’ to ‘2_compare_test_01_b_b_basic_tests_formlm_formlm.Rout.save’ ... OK Running ‘2_compare_test_01_b_c_basic_tests_formlm_formnls.R’ [0s/0s] Comparing ‘2_compare_test_01_b_c_basic_tests_formlm_formnls.Rout’ to ‘2_compare_test_01_b_c_basic_tests_formlm_formnls.Rout.save’ ... OK Running ‘2_compare_test_01_b_d_basic_tests_formlm_lm.R’ [0s/0s] Comparing ‘2_compare_test_01_b_d_basic_tests_formlm_lm.Rout’ to ‘2_compare_test_01_b_d_basic_tests_formlm_lm.Rout.save’ ... OK Running ‘2_compare_test_01_b_e_basic_tests_formlm_nls.R’ [0s/0s] Comparing ‘2_compare_test_01_b_e_basic_tests_formlm_nls.Rout’ to ‘2_compare_test_01_b_e_basic_tests_formlm_nls.Rout.save’ ... OK Running ‘2_compare_test_01_c_a_basic_tests_formnls_func.R’ [0s/0s] Comparing ‘2_compare_test_01_c_a_basic_tests_formnls_func.Rout’ to ‘2_compare_test_01_c_a_basic_tests_formnls_func.Rout.save’ ... OK Running ‘2_compare_test_01_c_b_basic_tests_formnls_formlm.R’ [0s/0s] Comparing ‘2_compare_test_01_c_b_basic_tests_formnls_formlm.Rout’ to ‘2_compare_test_01_c_b_basic_tests_formnls_formlm.Rout.save’ ... OK Running ‘2_compare_test_01_c_c_basic_tests_formnls_formnls.R’ [0s/0s] Comparing ‘2_compare_test_01_c_c_basic_tests_formnls_formnls.Rout’ to ‘2_compare_test_01_c_c_basic_tests_formnls_formnls.Rout.save’ ... OK Running ‘2_compare_test_01_c_d_basic_tests_formnls_lm.R’ [0s/0s] Comparing ‘2_compare_test_01_c_d_basic_tests_formnls_lm.Rout’ to ‘2_compare_test_01_c_d_basic_tests_formnls_lm.Rout.save’ ... OK Running ‘2_compare_test_01_c_e_basic_tests_formnls_nls.R’ [0s/0s] Comparing ‘2_compare_test_01_c_e_basic_tests_formnls_nls.Rout’ to ‘2_compare_test_01_c_e_basic_tests_formnls_nls.Rout.save’ ... OK Running ‘2_compare_test_01_d_a_basic_tests_lm_func.R’ [0s/0s] Comparing ‘2_compare_test_01_d_a_basic_tests_lm_func.Rout’ to ‘2_compare_test_01_d_a_basic_tests_lm_func.Rout.save’ ... OK Running ‘2_compare_test_01_d_b_basic_tests_lm_formlm.R’ [0s/0s] Comparing ‘2_compare_test_01_d_b_basic_tests_lm_formlm.Rout’ to ‘2_compare_test_01_d_b_basic_tests_lm_formlm.Rout.save’ ... OK Running ‘2_compare_test_01_d_c_basic_tests_lm_formnls.R’ [0s/0s] Comparing ‘2_compare_test_01_d_c_basic_tests_lm_formnls.Rout’ to ‘2_compare_test_01_d_c_basic_tests_lm_formnls.Rout.save’ ... OK Running ‘2_compare_test_01_d_d_basic_tests_lm_lm.R’ [0s/0s] Comparing ‘2_compare_test_01_d_d_basic_tests_lm_lm.Rout’ to ‘2_compare_test_01_d_d_basic_tests_lm_lm.Rout.save’ ... OK Running ‘2_compare_test_01_d_e_basic_tests_lm_nls.R’ [0s/0s] Comparing ‘2_compare_test_01_d_e_basic_tests_lm_nls.Rout’ to ‘2_compare_test_01_d_e_basic_tests_lm_nls.Rout.save’ ... OK Running ‘2_compare_test_01_e_a_basic_tests_nls_func.R’ [0s/0s] Comparing ‘2_compare_test_01_e_a_basic_tests_nls_func.Rout’ to ‘2_compare_test_01_e_a_basic_tests_nls_func.Rout.save’ ... OK Running ‘2_compare_test_01_e_b_basic_tests_nls_formlm.R’ [0s/0s] Comparing ‘2_compare_test_01_e_b_basic_tests_nls_formlm.Rout’ to ‘2_compare_test_01_e_b_basic_tests_nls_formlm.Rout.save’ ... OK Running ‘2_compare_test_01_e_c_basic_tests_nls_formnls.R’ [0s/0s] Comparing ‘2_compare_test_01_e_c_basic_tests_nls_formnls.Rout’ to ‘2_compare_test_01_e_c_basic_tests_nls_formnls.Rout.save’ ... OK Running ‘2_compare_test_01_e_d_basic_tests_nls_lm.R’ [0s/0s] Comparing ‘2_compare_test_01_e_d_basic_tests_nls_lm.Rout’ to ‘2_compare_test_01_e_d_basic_tests_nls_lm.Rout.save’ ... OK Running ‘2_compare_test_01_e_e_basic_tests_nls_nls.R’ [0s/0s] Comparing ‘2_compare_test_01_e_e_basic_tests_nls_nls.Rout’ to ‘2_compare_test_01_e_e_basic_tests_nls_nls.Rout.save’ ... OK Running ‘2_compare_test_02_func_H0_tests.R’ [25s/26s] Comparing ‘2_compare_test_02_func_H0_tests.Rout’ to ‘2_compare_test_02_func_H0_tests.Rout.save’ ... OK Running ‘2_compare_test_03_plot.R’ [12s/13s] Comparing ‘2_compare_test_03_plot.Rout’ to ‘2_compare_test_03_plot.Rout.save’ ... OK Running ‘2_compare_test_04_ks_test.R’ [0s/0s] Comparing ‘2_compare_test_04_ks_test.Rout’ to ‘2_compare_test_04_ks_test.Rout.save’ ... OK Running ‘2_compare_test_05_rejection.R’ [0s/0s] Comparing ‘2_compare_test_05_rejection.Rout’ to ‘2_compare_test_05_rejection.Rout.save’ ... OK Running ‘2_compare_test_06_update.R’ [0s/0s] Comparing ‘2_compare_test_06_update.Rout’ to ‘2_compare_test_06_update.Rout.save’ ... OK Running ‘2_compare_test_07_testf_no_X.R’ [0s/0s] Comparing ‘2_compare_test_07_testf_no_X.Rout’ to ‘2_compare_test_07_testf_no_X.Rout.save’ ... OK Running ‘2_compare_test_08_truef_no_X.R’ [0s/0s] Comparing ‘2_compare_test_08_truef_no_X.Rout’ to ‘2_compare_test_08_truef_no_X.Rout.save’ ... OK Running ‘2_compare_test_09_no_X.R’ [0s/0s] Comparing ‘2_compare_test_09_no_X.Rout’ to ‘2_compare_test_09_no_X.Rout.save’ ... OK Running ‘2_compare_test_10_covariances.R’ [4s/4s] Comparing ‘2_compare_test_10_covariances.Rout’ to ‘2_compare_test_10_covariances.Rout.save’ ... OK Running ‘2_compare_test_11_symmetric.R’ [1s/1s] Comparing ‘2_compare_test_11_symmetric.Rout’ to ‘2_compare_test_11_symmetric.Rout.save’ ... OK Running ‘2_compare_test_12_keep.R’ [1s/1s] Comparing ‘2_compare_test_12_keep.Rout’ to ‘2_compare_test_12_keep.Rout.save’ ... OK Running ‘2_compare_test_13_manual.R’ [0s/1s] Comparing ‘2_compare_test_13_manual.Rout’ to ‘2_compare_test_13_manual.Rout.save’ ... OK Running ‘2_compare_test_14_err_dist.R’ [1s/1s] Comparing ‘2_compare_test_14_err_dist.Rout’ to ‘2_compare_test_14_err_dist.Rout.save’ ... OK Running ‘2_compare_test_15_test_mean_formula_lm.R’ [0s/0s] Comparing ‘2_compare_test_15_test_mean_formula_lm.Rout’ to ‘2_compare_test_15_test_mean_formula_lm.Rout.save’ ... OK Running ‘2_compare_test_16_true_mean_formula_lm.R’ [1s/1s] Comparing ‘2_compare_test_16_true_mean_formula_lm.Rout’ to ‘2_compare_test_16_true_mean_formula_lm.Rout.save’ ... OK Running ‘2_compare_test_17_data_lengths.R’ [0s/0s] Comparing ‘2_compare_test_17_data_lengths.Rout’ to ‘2_compare_test_17_data_lengths.Rout.save’ ... OK Running ‘2_compare_test_18_global_override.R’ [0s/0s] Comparing ‘2_compare_test_18_global_override.Rout’ to ‘2_compare_test_18_global_override.Rout.save’ ... OK Running ‘2_compare_test_99_odd_situation.R’ [0s/0s] Comparing ‘2_compare_test_99_odd_situation.Rout’ to ‘2_compare_test_99_odd_situation.Rout.save’ ... OK
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [17s/19s] OK
checking PDF version of manual ... [5s/6s] OK
DONE Status: OK
using check arguments '--no-clean-on-error '