Install log for 'bigtabulate'

* installing *source* package ‘bigtabulate’ ...
** package ‘bigtabulate’ successfully unpacked and MD5 sums checked
** using staged installation
  checking for Sun Studio compiler...
no
  checking for OS...
Darwin
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/bigmemory/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c bigtabulate.cpp -o bigtabulate.o
In file included from bigtabulate.cpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/shared_ptr.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:18:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'BreakMapper<double>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
    delete x;
    ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<BreakMapper<double>>' requested here
            boost::checked_delete( p );
                   ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:280:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<BreakMapper<double>>' requested here
    boost::detail::shared_count( p ).swap( pn );
    ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:374:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<Mapper<double>, BreakMapper<double>>' requested here
        boost::detail::sp_pointer_construct( this, p, pn );
                       ^
bigtabulate.cpp:438:26: note: in instantiation of function template specialization 'boost::shared_ptr<Mapper<double>>::shared_ptr<BreakMapper<double>>' requested here
      mappers.push_back( MapperPtr(
                         ^
bigtabulate.cpp:772:10: note: in instantiation of function template specialization 'TAPPLY<double, MatrixAccessor<double>>' requested here
  return TAPPLY<double>( MatrixAccessor<double>( REAL(numericMatrix),
         ^
In file included from bigtabulate.cpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/shared_ptr.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:18:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'IndexMapper<double>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
    delete x;
    ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<IndexMapper<double>>' requested here
            boost::checked_delete( p );
                   ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:280:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<IndexMapper<double>>' requested here
    boost::detail::shared_count( p ).swap( pn );
    ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:374:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<Mapper<double>, IndexMapper<double>>' requested here
        boost::detail::sp_pointer_construct( this, p, pn );
                       ^
bigtabulate.cpp:445:26: note: in instantiation of function template specialization 'boost::shared_ptr<Mapper<double>>::shared_ptr<IndexMapper<double>>' requested here
      mappers.push_back( MapperPtr( 
                         ^
bigtabulate.cpp:772:10: note: in instantiation of function template specialization 'TAPPLY<double, MatrixAccessor<double>>' requested here
  return TAPPLY<double>( MatrixAccessor<double>( REAL(numericMatrix),
         ^
In file included from bigtabulate.cpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/shared_ptr.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:18:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'BreakMapper<int>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
    delete x;
    ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<BreakMapper<int>>' requested here
            boost::checked_delete( p );
                   ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:280:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<BreakMapper<int>>' requested here
    boost::detail::shared_count( p ).swap( pn );
    ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:374:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<Mapper<int>, BreakMapper<int>>' requested here
        boost::detail::sp_pointer_construct( this, p, pn );
                       ^
bigtabulate.cpp:438:26: note: in instantiation of function template specialization 'boost::shared_ptr<Mapper<int>>::shared_ptr<BreakMapper<int>>' requested here
      mappers.push_back( MapperPtr(
                         ^
bigtabulate.cpp:782:10: note: in instantiation of function template specialization 'TAPPLY<int, MatrixAccessor<int>>' requested here
  return TAPPLY<int>( MatrixAccessor<int>( INTEGER(numericMatrix),
         ^
In file included from bigtabulate.cpp:7:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/shared_ptr.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:18:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'IndexMapper<int>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
    delete x;
    ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<IndexMapper<int>>' requested here
            boost::checked_delete( p );
                   ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:280:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<IndexMapper<int>>' requested here
    boost::detail::shared_count( p ).swap( pn );
    ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/smart_ptr/shared_ptr.hpp:374:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<Mapper<int>, IndexMapper<int>>' requested here
        boost::detail::sp_pointer_construct( this, p, pn );
                       ^
bigtabulate.cpp:445:26: note: in instantiation of function template specialization 'boost::shared_ptr<Mapper<int>>::shared_ptr<IndexMapper<int>>' requested here
      mappers.push_back( MapperPtr( 
                         ^
bigtabulate.cpp:782:10: note: in instantiation of function template specialization 'TAPPLY<int, MatrixAccessor<int>>' requested here
  return TAPPLY<int>( MatrixAccessor<int>( INTEGER(numericMatrix),
         ^
4 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/bigmemory/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c bigtabulate_init.c -o bigtabulate_init.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o bigtabulate.so bigtabulate.o bigtabulate_init.o -DDARWIN -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/bigtabulate.Rcheck/00LOCK-bigtabulate/00new/bigtabulate/libs
** generating debug symbols (dSYM)
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bigtabulate)