* installing *source* package ‘TFMPvalue’ ... ** package ‘TFMPvalue’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using C++11 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ArgumentException.cpp -o ArgumentException.o clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c FileException.cpp -o FileException.o clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Matrix.cpp -o Matrix.o clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ParseException.cpp -o ParseException.o clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c TFMMain.cpp -o TFMMain.o TFMMain.cpp:80:13: warning: variable 'totalOp' set but not used [-Wunused-but-set-variable] qlonglong totalOp = 0; ^ TFMMain.cpp:79:13: warning: variable 'totalSize' set but not used [-Wunused-but-set-variable] qlonglong totalSize = 0; ^ TFMMain.cpp:159:8: warning: unused variable 'sortColumns' [-Wunused-variable] bool sortColumns = false; ^ 3 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c TFMPvalue_init.c -o TFMPvalue_init.o clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c TFMpvalue.cpp -o TFMpvalue.o TFMpvalue.cpp:120:13: warning: unused variable 'totalOp' [-Wunused-variable] qlonglong totalOp = 0; ^ TFMpvalue.cpp:119:13: warning: unused variable 'totalSize' [-Wunused-variable] qlonglong totalSize = 0; ^ TFMpvalue.cpp:186:13: warning: unused variable 'totalOp' [-Wunused-variable] qlonglong totalOp = 0; ^ TFMpvalue.cpp:190:10: warning: unused variable 'pvalue' [-Wunused-variable] double pvalue = m.fastPvalue(&m,(qlonglong)(score * m.granularity + m.offset)); ^ TFMpvalue.cpp:185:13: warning: unused variable 'totalSize' [-Wunused-variable] qlonglong totalSize = 0; ^ TFMpvalue.cpp:220:13: warning: variable 'totalOp' set but not used [-Wunused-but-set-variable] qlonglong totalOp = 0; ^ TFMpvalue.cpp:219:13: warning: variable 'totalSize' set but not used [-Wunused-but-set-variable] qlonglong totalSize = 0; ^ TFMpvalue.cpp:312:13: warning: variable 'totalSize' set but not used [-Wunused-but-set-variable] qlonglong totalSize; ^ TFMpvalue.cpp:313:13: warning: variable 'totalOp' set but not used [-Wunused-but-set-variable] qlonglong totalOp; ^ 9 warnings generated. clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o TFMPvalue.so ArgumentException.o FileException.o Matrix.o ParseException.o TFMMain.o TFMPvalue_init.o TFMpvalue.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/TFMPvalue.Rcheck/00LOCK-TFMPvalue/00new/TFMPvalue/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TFMPvalue)