* installing *source* package ‘SemiCompRisks’ ...
** package ‘SemiCompRisks’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BAFT_DPscr.c -o BAFT_DPscr.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BAFT_DPscr_Updates.c -o BAFT_DPscr_Updates.o
BAFT_DPscr_Updates.c:1574:42: warning: variable 'LL_negInf' set but not used [-Wunused-but-set-variable]
int i, j, k, n_ir, r_ind, wh_ri, u_, LL_negInf;
^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BAFT_DPsurv.c -o BAFT_DPsurv.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BAFT_DPsurv_Updates.c -o BAFT_DPsurv_Updates.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BAFT_LNscr.c -o BAFT_LNscr.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BAFT_LNscr_Updates.c -o BAFT_LNscr_Updates.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BAFT_LNsurv.c -o BAFT_LNsurv.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BAFT_LNsurv_Updates.c -o BAFT_LNsurv_Updates.o
BAFT_LNsurv_Updates.c:140:74: warning: variable 'logprior_prop' set but not used [-Wunused-but-set-variable]
double eta, eta_prop, loglh, loglh_prop, logR, beta0_prop, logprior, logprior_prop;
^
BAFT_LNsurv_Updates.c:140:64: warning: variable 'logprior' set but not used [-Wunused-but-set-variable]
double eta, eta_prop, loglh, loglh_prop, logR, beta0_prop, logprior, logprior_prop;
^
2 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeDpCorScr.c -o BpeDpCorScr.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeDpCorScrSM.c -o BpeDpCorScrSM.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeDpCorScrSM_Updates.c -o BpeDpCorScrSM_Updates.o
BpeDpCorScrSM_Updates.c:507:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
BpeDpCorScrSM_Updates.c:734:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
BpeDpCorScrSM_Updates.c:948:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
3 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeDpCorScr_Updates.c -o BpeDpCorScr_Updates.o
BpeDpCorScr_Updates.c:514:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
BpeDpCorScr_Updates.c:746:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
BpeDpCorScr_Updates.c:965:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
3 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeDpCorSurv.c -o BpeDpCorSurv.o
BpeDpCorSurv.c:233:37: warning: variable 'pCP' set but not used [-Wunused-but-set-variable]
double pRP, pBH, pSP, pBI, pDI, pCP, choice;
^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeDpCorSurv_Updates.c -o BpeDpCorSurv_Updates.o
BpeDpCorSurv_Updates.c:186:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
BpeDpCorSurv_Updates.c:1261:18: warning: variable 'mu_temp' set but not used [-Wunused-but-set-variable]
double logR, mu_temp, zeta_temp;
^
2 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeMvnCorScr.c -o BpeMvnCorScr.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeMvnCorScrSM.c -o BpeMvnCorScrSM.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeMvnCorScrSM_Updates.c -o BpeMvnCorScrSM_Updates.o
BpeMvnCorScrSM_Updates.c:503:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
BpeMvnCorScrSM_Updates.c:731:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
BpeMvnCorScrSM_Updates.c:954:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
3 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeMvnCorScr_Updates.c -o BpeMvnCorScr_Updates.o
BpeMvnCorScr_Updates.c:503:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
BpeMvnCorScr_Updates.c:732:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
BpeMvnCorScr_Updates.c:955:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
3 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeMvnCorSurv.c -o BpeMvnCorSurv.o
BpeMvnCorSurv.c:201:42: warning: variable 'pVP' set but not used [-Wunused-but-set-variable]
double pRP, pBH, pSP, pBI, pDI, pCP, pVP, choice;
^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeMvnCorSurv_Updates.c -o BpeMvnCorSurv_Updates.o
BpeMvnCorSurv_Updates.c:181:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeScr.c -o BpeScr.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeScrSM.c -o BpeScrSM.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeScrSM_Updates.c -o BpeScrSM_Updates.o
BpeScrSM_Updates.c:519:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
BpeScrSM_Updates.c:728:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
BpeScrSM_Updates.c:949:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
3 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeScr_Updates.c -o BpeScr_Updates.o
BpeScr_Updates.c:520:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
BpeScr_Updates.c:736:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
BpeScr_Updates.c:958:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
3 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeSurv.c -o BpeSurv.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BpeSurv_Updates.c -o BpeSurv_Updates.o
BpeSurv_Updates.c:313:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
BpeSurv_Updates.c:518:20: warning: variable 'nu_lam_prop' set but not used [-Wunused-but-set-variable]
double nu_lam, nu_lam_prop;
^
2 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibCorSurv.c -o BweibCorSurv.o
BweibCorSurv.c:144:32: warning: variable 'pVP' set but not used [-Wunused-but-set-variable]
double pRP, pSH, pSC, pCP, pVP, choice;
^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibCorSurv_Updates.c -o BweibCorSurv_Updates.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibDpCorScr.c -o BweibDpCorScr.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibDpCorScrSM.c -o BweibDpCorScrSM.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibDpCorScrSM_Updates.c -o BweibDpCorScrSM_Updates.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibDpCorScr_Updates.c -o BweibDpCorScr_Updates.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibDpCorSurv.c -o BweibDpCorSurv.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibDpCorSurv_Updates.c -o BweibDpCorSurv_Updates.o
BweibDpCorSurv_Updates.c:553:18: warning: variable 'mu_temp' set but not used [-Wunused-but-set-variable]
double logR, mu_temp, zeta_temp;
^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibMvnCorScr.c -o BweibMvnCorScr.o
BweibMvnCorScr.c:320:99: warning: variable 'pVP' set but not used [-Wunused-but-set-variable]
double pRP1, pRP2, pRP3, pSH1, pSH2, pSH3, pSC1, pSC2, pSC3, pDP, pFP, pMP, pCP1, pCP2, pCP3, pVP, choice;
^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibMvnCorScrSM.c -o BweibMvnCorScrSM.o
BweibMvnCorScrSM.c:335:99: warning: variable 'pVP' set but not used [-Wunused-but-set-variable]
double pRP1, pRP2, pRP3, pSH1, pSH2, pSH3, pSC1, pSC2, pSC3, pDP, pFP, pMP, pCP1, pCP2, pCP3, pVP, choice;
^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibMvnCorScrSM_Updates.c -o BweibMvnCorScrSM_Updates.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibMvnCorScr_Updates.c -o BweibMvnCorScr_Updates.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibScr.c -o BweibScr.o
BweibScr.c:231:71: warning: variable 'pFP' set but not used [-Wunused-but-set-variable]
double pRP1, pRP2, pRP3, pSH1, pSH2, pSH3, pSC1, pSC2, pSC3, pDP, pFP, choice;
^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibScrSM.c -o BweibScrSM.o
BweibScrSM.c:237:71: warning: variable 'pFP' set but not used [-Wunused-but-set-variable]
double pRP1, pRP2, pRP3, pSH1, pSH2, pSH3, pSC1, pSC2, pSC3, pDP, pFP, choice;
^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibScrSM_Updates.c -o BweibScrSM_Updates.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibScr_Updates.c -o BweibScr_Updates.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibSurv.c -o BweibSurv.o
BweibSurv.c:109:22: warning: variable 'pSC' set but not used [-Wunused-but-set-variable]
double pRP, pSH, pSC, choice;
^
1 warning generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BweibSurv_Updates.c -o BweibSurv_Updates.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Utilities.c -o Utilities.o
Utilities.c:6029:64: warning: variable 'temp' set but not used [-Wunused-but-set-variable]
double mu_k, sigSq_k, mixProb_den, val1, val2, log1, logk, temp;
^
Utilities.c:6029:58: warning: variable 'logk' set but not used [-Wunused-but-set-variable]
double mu_k, sigSq_k, mixProb_den, val1, val2, log1, logk, temp;
^
Utilities.c:6029:52: warning: variable 'log1' set but not used [-Wunused-but-set-variable]
double mu_k, sigSq_k, mixProb_den, val1, val2, log1, logk, temp;
^
Utilities.c:6382:35: warning: variable 'y2_temp' set but not used [-Wunused-but-set-variable]
double eta1, eta2, eta3, gam, y2_temp;
^
4 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o SemiCompRisks.so BAFT_DPscr.o BAFT_DPscr_Updates.o BAFT_DPsurv.o BAFT_DPsurv_Updates.o BAFT_LNscr.o BAFT_LNscr_Updates.o BAFT_LNsurv.o BAFT_LNsurv_Updates.o BpeDpCorScr.o BpeDpCorScrSM.o BpeDpCorScrSM_Updates.o BpeDpCorScr_Updates.o BpeDpCorSurv.o BpeDpCorSurv_Updates.o BpeMvnCorScr.o BpeMvnCorScrSM.o BpeMvnCorScrSM_Updates.o BpeMvnCorScr_Updates.o BpeMvnCorSurv.o BpeMvnCorSurv_Updates.o BpeScr.o BpeScrSM.o BpeScrSM_Updates.o BpeScr_Updates.o BpeSurv.o BpeSurv_Updates.o BweibCorSurv.o BweibCorSurv_Updates.o BweibDpCorScr.o BweibDpCorScrSM.o BweibDpCorScrSM_Updates.o BweibDpCorScr_Updates.o BweibDpCorSurv.o BweibDpCorSurv_Updates.o BweibMvnCorScr.o BweibMvnCorScrSM.o BweibMvnCorScrSM_Updates.o BweibMvnCorScr_Updates.o BweibScr.o BweibScrSM.o BweibScrSM_Updates.o BweibScr_Updates.o BweibSurv.o BweibSurv_Updates.o Utilities.o registerDynamicSymbol.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/SemiCompRisks.Rcheck/00LOCK-SemiCompRisks/00new/SemiCompRisks/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SemiCompRisks)