Install log for 'Phase12Compare'

* installing *source* package ‘Phase12Compare’ ...
** package ‘Phase12Compare’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c SPSOCODE.cpp -o SPSOCODE.o
In file included from SPSOCODE.cpp:3:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo:26:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:321:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages]
  #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
          ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:326:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages]
    #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
            ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppArmadillo/include/armadillo_bits/config.hpp:329:11: warning: INFO: see the documentation for details [-W#pragma-messages]
  #pragma message ("INFO: see the documentation for details")
          ^
SPSOCODE.cpp:676:7: warning: unused variable 'm' [-Wunused-variable]
  int m=0;
      ^
SPSOCODE.cpp:1081:10: warning: unused variable 'pu' [-Wunused-variable]
  double pu=0;
         ^
SPSOCODE.cpp:1080:10: warning: unused variable 'p' [-Wunused-variable]
  double p=0;
         ^
SPSOCODE.cpp:1109:7: warning: unused variable 'Count' [-Wunused-variable]
  int Count=0;
      ^
SPSOCODE.cpp:1083:10: warning: unused variable 'tol' [-Wunused-variable]
  double tol=.005;
         ^
SPSOCODE.cpp:1082:10: warning: unused variable 'pl' [-Wunused-variable]
  double pl=0;
         ^
SPSOCODE.cpp:1119:7: warning: unused variable 'nREP' [-Wunused-variable]
  int nREP=0;
      ^
SPSOCODE.cpp:1162:10: warning: unused variable 'min1' [-Wunused-variable]
  double min1=0;
         ^
SPSOCODE.cpp:2043:10: warning: unused variable 'min1' [-Wunused-variable]
  double min1=0;
         ^
SPSOCODE.cpp:2000:7: warning: unused variable 'nREP' [-Wunused-variable]
  int nREP=0;
      ^
SPSOCODE.cpp:1990:7: warning: unused variable 'Count' [-Wunused-variable]
  int Count=0;
      ^
SPSOCODE.cpp:2982:10: warning: unused variable 'holdmin' [-Wunused-variable]
  double holdmin=1;
         ^
SPSOCODE.cpp:2943:10: warning: unused variable 'epTC' [-Wunused-variable]
  double epTC = 1;
         ^
SPSOCODE.cpp:2942:10: warning: unused variable 'epEC' [-Wunused-variable]
  double epEC = 1;
         ^
SPSOCODE.cpp:2822:10: warning: variable 'phi' set but not used [-Wunused-but-set-variable]
  double phi=0;
         ^
SPSOCODE.cpp:2893:10: warning: unused variable 'epprop' [-Wunused-variable]
  double epprop = 0; //proposal values for epsilon
         ^
SPSOCODE.cpp:2821:10: warning: unused variable 'phivar' [-Wunused-variable]
  double phivar=Hypervars[2];  //Variance parameter for frailty correlations
         ^
SPSOCODE.cpp:3801:7: warning: unused variable 'nREP' [-Wunused-variable]
  int nREP=0;
      ^
SPSOCODE.cpp:3841:7: warning: variable 'STOPPED' set but not used [-Wunused-but-set-variable]
  int STOPPED=0;
      ^
SPSOCODE.cpp:3791:7: warning: unused variable 'Count' [-Wunused-variable]
  int Count=0;
      ^
SPSOCODE.cpp:3824:7: warning: unused variable 'm' [-Wunused-variable]
  int m=0;
      ^
SPSOCODE.cpp:3848:7: warning: unused variable 'nRep' [-Wunused-variable]
  int nRep=0;
      ^
SPSOCODE.cpp:3844:10: warning: unused variable 'min1' [-Wunused-variable]
  double min1=0;
         ^
SPSOCODE.cpp:3842:7: warning: unused variable 'i' [-Wunused-variable]
  int i=0;
      ^
SPSOCODE.cpp:3744:7: warning: unused variable 'Stopped' [-Wunused-variable]
  int Stopped=0;
      ^
SPSOCODE.cpp:4311:7: warning: variable 'STOPPED' set but not used [-Wunused-but-set-variable]
  int STOPPED=0;
      ^
SPSOCODE.cpp:4222:7: warning: unused variable 'Stopped' [-Wunused-variable]
  int Stopped=0;
      ^
SPSOCODE.cpp:4312:7: warning: unused variable 'i' [-Wunused-variable]
  int i=0;
      ^
SPSOCODE.cpp:4268:7: warning: unused variable 'nREP' [-Wunused-variable]
  int nREP=0;
      ^
SPSOCODE.cpp:4314:10: warning: unused variable 'min1' [-Wunused-variable]
  double min1=0;
         ^
SPSOCODE.cpp:4318:7: warning: unused variable 'nRep' [-Wunused-variable]
  int nRep=0;
      ^
SPSOCODE.cpp:4243:10: warning: unused variable 'tol' [-Wunused-variable]
  double tol=.005;
         ^
SPSOCODE.cpp:4258:7: warning: unused variable 'Count' [-Wunused-variable]
  int Count=0;
      ^
SPSOCODE.cpp:4242:10: warning: unused variable 'pl' [-Wunused-variable]
  double pl=0;
         ^
SPSOCODE.cpp:4240:10: warning: unused variable 'p' [-Wunused-variable]
  double p=0;
         ^
SPSOCODE.cpp:4294:7: warning: unused variable 'm' [-Wunused-variable]
  int m=0;
      ^
SPSOCODE.cpp:4241:10: warning: unused variable 'pu' [-Wunused-variable]
  double pu=0;
         ^
40 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o Phase12Compare.so RcppExports.o SPSOCODE.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/Phase12Compare.Rcheck/00LOCK-Phase12Compare/00new/Phase12Compare/libs
** generating debug symbols (dSYM)
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Phase12Compare)