Check results for 'MMLR'

using R version 4.4.0 alpha (2024-03-31 r86238)
using platform: aarch64-apple-darwin20
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0
running under: macOS Ventura 13.4
using session charset: UTF-8
checking for file ‘MMLR/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘MMLR’ version ‘0.2.0’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘MMLR’ can be installed ... [1s/1s] OK See the install log for details.
checking installed package size ... OK
checking package directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [0s/0s] OK
checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
checking whether the package can be unloaded cleanly ... [0s/0s] OK
checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
checking loading without being on the library search path ... [0s/0s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [1s/1s] OK
checking Rd files ... [0s/0s] NOTE checkRd: (-1) Aver_soj_time.Rd:25: Lost braces; missing escapes or markup? 25 | Matrix Q is so-called Generator matrix: \eqn{Q=\lambda-\Lambda, where \lambda} is matrix with known transition rates from state $s_{i}$ to state $s_{j}$, | ^ checkRd: (-1) Aver_soj_time.Rd:25: Lost braces; missing escapes or markup? 25 | Matrix Q is so-called Generator matrix: \eqn{Q=\lambda-\Lambda, where \lambda} is matrix with known transition rates from state $s_{i}$ to state $s_{j}$, | ^ checkRd: (-1) B_est.Rd:34: Lost braces; missing escapes or markup? 34 | where vector of average sojourn times in each state $t_{i}$ is calculated using function Aver_soj_time, $t_{i}$ is an element of tGiven, $x_{i}$ is a vector of matrix X. | ^ checkRd: (-1) B_est.Rd:34: Lost braces; missing escapes or markup? 34 | where vector of average sojourn times in each state $t_{i}$ is calculated using function Aver_soj_time, $t_{i}$ is an element of tGiven, $x_{i}$ is a vector of matrix X. | ^ checkRd: (-1) B_est.Rd:34: Lost braces; missing escapes or markup? 34 | where vector of average sojourn times in each state $t_{i}$ is calculated using function Aver_soj_time, $t_{i}$ is an element of tGiven, $x_{i}$ is a vector of matrix X. | ^ checkRd: (-1) VarY.Rd:31: Lost braces; missing escapes or markup? 31 | where vector of average sojourn times in each state $t_{i}$ is calculated using function Aver_soj_time | ^ checkRd: (-1) Ysimulation.Rd:30: Lost braces; missing escapes or markup? 30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$ | ^ checkRd: (-1) Ysimulation.Rd:30: Lost braces; missing escapes or markup? 30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$ | ^ checkRd: (-1) Ysimulation.Rd:30: Lost braces; missing escapes or markup? 30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$ | ^ checkRd: (-1) Ysimulation.Rd:30: Lost braces; missing escapes or markup? 30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$ | ^ checkRd: (-1) Ysimulation.Rd:30: Lost braces 30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$ | ^ checkRd: (-1) randomizeTau.Rd:29: Lost braces; missing escapes or markup? 29 | Initial values of observation times are multiplied by a random value ($tau_{i}$ x k x rnd(0, 1)). All times are independent and time of ith observation has uniform distribution on (0, k$tau_{i}$). | ^ checkRd: (-1) randomizeTau.Rd:29: Lost braces; missing escapes or markup? 29 | Initial values of observation times are multiplied by a random value ($tau_{i}$ x k x rnd(0, 1)). All times are independent and time of ith observation has uniform distribution on (0, k$tau_{i}$). | ^ checkRd: (-1) randomizeX.Rd:41: Lost braces; missing escapes or markup? 41 | Random perturbations are added to the initial values of matrix X elements ($X_{i,j}$ + rnd), which are distributed according to a chosen distribution (possible alternatives: uniform, exponential and gamma distribution). | ^
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory
checking examples ... [1s/1s] OK
checking PDF version of manual ... [3s/3s] OK
DONE Status: 2 NOTEs
using check arguments '--no-clean-on-error '