* installing *source* package ‘GUD’ ... ** package ‘GUD’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using C++17 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include' -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include' -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_DTP.cc -o stanExports_DTP.o In file included from stanExports_DTP.cc:5: In file included from ./stanExports_DTP.h:23: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_DTP.cc:5: In file included from ./stanExports_DTP.h:23: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_DTP.cc:5: In file included from ./stanExports_DTP.h:23: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge> { ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from stanExports_DTP.cc:5: In file included from ./stanExports_DTP.h:23: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_DTP.cc:5: ./stanExports_DTP.h:517:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] int pos__ = std::numeric_limits::min(); ^ In file included from stanExports_DTP.cc:5: In file included from ./stanExports_DTP.h:23: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from stanExports_DTP.cc:5: ./stanExports_DTP.h:156:22: warning: unused variable 'p1' [-Wunused-variable] local_scalar_t__ p1 = DUMMY_VAR__; ^ ./stanExports_DTP.h:485:11: note: in instantiation of function template specialization 'model_DTP_namespace::skewed_student_t_lpdf, Eigen::Matrix>, double, double, double, double, nullptr>' requested here skewed_student_t_lpdf( ^ ./stanExports_DTP.h:737:5: note: in instantiation of function template specialization 'model_DTP_namespace::model_DTP::write_array_impl, boost::random::linear_congruential_engine>, std::vector, std::vector, std::vector, nullptr, nullptr, nullptr>' requested here write_array_impl(base_rng, params_r, params_i, vars, ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/io/random_var_context.hpp:61:11: note: in instantiation of function template specialization 'model_DTP_namespace::model_DTP::write_array, boost::random::linear_congruential_engine>>' requested here model.write_array(rng, unconstrained_params_, int_params, ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/services/util/initialize.hpp:94:36: note: in instantiation of function template specialization 'stan::io::random_var_context::random_var_context, boost::random::linear_congruential_engine>>' requested here stan::io::random_var_context random_context(model, rng, init_radius, ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here std::vector cont_vector = util::initialize( ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_DTP.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_DTP.cc:5: ./stanExports_DTP.h:156:22: warning: unused variable 'p1' [-Wunused-variable] local_scalar_t__ p1 = DUMMY_VAR__; ^ ./stanExports_DTP.h:369:24: note: in instantiation of function template specialization 'model_DTP_namespace::skewed_student_t_lpdf, const Eigen::Map, 0>, const Eigen::Product, 0>, Eigen::Matrix, 0>>, double, double, double, double, nullptr>' requested here lp_accum__.add(skewed_student_t_lpdf( ^ ./stanExports_DTP.h:748:12: note: in instantiation of function template specialization 'model_DTP_namespace::model_DTP::log_prob_impl, std::vector, nullptr, nullptr>' requested here return log_prob_impl(params_r, params_i, pstream); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/services/util/initialize.hpp:129:33: note: in instantiation of function template specialization 'model_DTP_namespace::model_DTP::log_prob' requested here log_prob = model.template log_prob(unconstrained, ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here std::vector cont_vector = util::initialize( ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_DTP.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_DTP.cc:5: ./stanExports_DTP.h:156:22: warning: unused variable 'p1' [-Wunused-variable] local_scalar_t__ p1 = DUMMY_VAR__; ^ ./stanExports_DTP.h:369:24: note: in instantiation of function template specialization 'model_DTP_namespace::skewed_student_t_lpdf, -1, 1, 0>, stan::math::var_value, stan::math::var_value, stan::math::var_value, stan::math::var_value, nullptr>' requested here lp_accum__.add(skewed_student_t_lpdf( ^ ./stanExports_DTP.h:748:12: note: in instantiation of function template specialization 'model_DTP_namespace::model_DTP::log_prob_impl>, std::vector, nullptr, nullptr>' requested here return log_prob_impl(params_r, params_i, pstream); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_DTP_namespace::model_DTP::log_prob>' requested here var adLogProb = model.template log_prob( ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/services/util/initialize.hpp:167:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here log_prob = stan::model::log_prob_grad( ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here std::vector cont_vector = util::initialize( ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_DTP.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ 9 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include' -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_FG.cc -o stanExports_FG.o In file included from stanExports_FG.cc:5: In file included from ./stanExports_FG.h:23: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_FG.cc:5: In file included from ./stanExports_FG.h:23: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_FG.cc:5: In file included from ./stanExports_FG.h:23: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge> { ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from stanExports_FG.cc:5: In file included from ./stanExports_FG.h:23: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_FG.cc:5: ./stanExports_FG.h:451:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] int pos__ = std::numeric_limits::min(); ^ In file included from stanExports_FG.cc:5: In file included from ./stanExports_FG.h:23: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ 6 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include' -I/opt/R/arm64/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_TPSC.cc -o stanExports_TPSC.o In file included from stanExports_TPSC.cc:5: In file included from ./stanExports_TPSC.h:23: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_TPSC.cc:5: In file included from ./stanExports_TPSC.h:23: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_TPSC.cc:5: In file included from ./stanExports_TPSC.h:23: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct ops_partials_edge> { ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? class ops_partials_edge; ^~~~~ struct In file included from stanExports_TPSC.cc:5: In file included from ./stanExports_TPSC.h:23: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_TPSC.cc:5: ./stanExports_TPSC.h:486:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] int pos__ = std::numeric_limits::min(); ^ In file included from stanExports_TPSC.cc:5: In file included from ./stanExports_TPSC.h:23: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim.hpp:14: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] const T x_extrema = 1 / (1 + a); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here rx = detail::ibeta_inv_imp( ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return ibeta_inv(a, b, p, static_cast(nullptr), pol); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<0>>>' requested here return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); ^ In file included from stanExports_TPSC.cc:5: ./stanExports_TPSC.h:150:22: warning: unused variable 'p1' [-Wunused-variable] local_scalar_t__ p1 = DUMMY_VAR__; ^ ./stanExports_TPSC.h:454:11: note: in instantiation of function template specialization 'model_TPSC_namespace::skewed_student_t_lpdf, Eigen::Matrix>, double, double, double, nullptr>' requested here skewed_student_t_lpdf( ^ ./stanExports_TPSC.h:691:5: note: in instantiation of function template specialization 'model_TPSC_namespace::model_TPSC::write_array_impl, boost::random::linear_congruential_engine>, std::vector, std::vector, std::vector, nullptr, nullptr, nullptr>' requested here write_array_impl(base_rng, params_r, params_i, vars, ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/io/random_var_context.hpp:61:11: note: in instantiation of function template specialization 'model_TPSC_namespace::model_TPSC::write_array, boost::random::linear_congruential_engine>>' requested here model.write_array(rng, unconstrained_params_, int_params, ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/services/util/initialize.hpp:94:36: note: in instantiation of function template specialization 'stan::io::random_var_context::random_var_context, boost::random::linear_congruential_engine>>' requested here stan::io::random_var_context random_context(model, rng, init_radius, ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here std::vector cont_vector = util::initialize( ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_TPSC.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_TPSC.cc:5: ./stanExports_TPSC.h:150:22: warning: unused variable 'p1' [-Wunused-variable] local_scalar_t__ p1 = DUMMY_VAR__; ^ ./stanExports_TPSC.h:350:24: note: in instantiation of function template specialization 'model_TPSC_namespace::skewed_student_t_lpdf, const Eigen::Map, 0>, const Eigen::Product, 0>, Eigen::Matrix, 0>>, double, double, double, nullptr>' requested here lp_accum__.add(skewed_student_t_lpdf( ^ ./stanExports_TPSC.h:702:12: note: in instantiation of function template specialization 'model_TPSC_namespace::model_TPSC::log_prob_impl, std::vector, nullptr, nullptr>' requested here return log_prob_impl(params_r, params_i, pstream); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/services/util/initialize.hpp:129:33: note: in instantiation of function template specialization 'model_TPSC_namespace::model_TPSC::log_prob' requested here log_prob = model.template log_prob(unconstrained, ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here std::vector cont_vector = util::initialize( ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_TPSC.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_TPSC.cc:5: ./stanExports_TPSC.h:150:22: warning: unused variable 'p1' [-Wunused-variable] local_scalar_t__ p1 = DUMMY_VAR__; ^ ./stanExports_TPSC.h:350:24: note: in instantiation of function template specialization 'model_TPSC_namespace::skewed_student_t_lpdf, -1, 1, 0>, stan::math::var_value, stan::math::var_value, stan::math::var_value, nullptr>' requested here lp_accum__.add(skewed_student_t_lpdf( ^ ./stanExports_TPSC.h:702:12: note: in instantiation of function template specialization 'model_TPSC_namespace::model_TPSC::log_prob_impl>, std::vector, nullptr, nullptr>' requested here return log_prob_impl(params_r, params_i, pstream); ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_TPSC_namespace::model_TPSC::log_prob>' requested here var adLogProb = model.template log_prob( ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/services/util/initialize.hpp:167:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here log_prob = stan::model::log_prob_grad( ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here std::vector cont_vector = util::initialize( ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_TPSC.cc:15:87: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ 9 warnings generated. clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o GUD.so RcppExports.o stanExports_DTP.o stanExports_FG.o stanExports_TPSC.o -L/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/lib/ -Wl,-rpath,/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/lib/ -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/GUD.Rcheck/00LOCK-GUD/00new/GUD/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GUD)