* installing *source* package ‘GLMcat’ ...
** package ‘GLMcat’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DiscreteCM.cpp -o DiscreteCM.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c GLMcat.cpp -o GLMcat.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c adjacentR.cpp -o adjacentR.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cdf.cpp -o cdf.o
In file included from cdf.cpp:10:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/distributions/students_t.hpp:16:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/beta.hpp:1721:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable]
const T x_extrema = 1 / (1 + a);
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder<long double>::temme_root_finder' requested here
temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2);
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse<long double, boost::math::policies::policy<detail::forwarding_arg1, detail::forwarding_arg2>>' requested here
x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol);
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp<long double, boost::math::policies::policy<detail::forwarding_arg1, detail::forwarding_arg2>>' requested here
rx = detail::ibeta_inv_imp(
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/t_distribution_inv.hpp:439:8: note: in instantiation of function template specialization 'boost::math::ibeta_inv<long double, long double, long double, long double, boost::math::policies::policy<>>' requested here
x = ibeta_inv(df / 2, T(0.5), 2 * probability, &y, pol);
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/t_distribution_inv.hpp:458:35: note: in instantiation of function template specialization 'boost::math::detail::fast_students_t_quantile_imp<long double, boost::math::policies::policy<>>' requested here
return boost::math::detail::fast_students_t_quantile_imp(df, p, pol, static_cast<std::false_type*>(nullptr));
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/special_functions/detail/t_distribution_inv.hpp:541:66: note: in instantiation of function template specialization 'boost::math::detail::fast_students_t_quantile_imp<long double, boost::math::policies::policy<>>' requested here
return policies::checked_narrowing_cast<T, forwarding_policy>(fast_students_t_quantile_imp(static_cast<value_type>(df), static_cast<value_type>(p), pol, static_cast<tag_type*>(nullptr)), "boost::math::students_t_quantile<%1%>(%1%,%1%,%1%)");
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include/boost/math/distributions/students_t.hpp:262:32: note: in instantiation of function template specialization 'boost::math::detail::fast_students_t_quantile<double, boost::math::policies::policy<>>' requested here
return boost::math::detail::fast_students_t_quantile(df, probability, Policy());
^
cdf.cpp:1358:23: note: in instantiation of function template specialization 'boost::math::quantile<double, boost::math::policies::policy<>>' requested here
return boost::math::quantile(student,value);
^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cumulativeR.cpp -o cumulativeR.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c reference.cpp -o reference.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sequentialR.cpp -o sequentialR.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o GLMcat.so DiscreteCM.o GLMcat.o RcppExports.o adjacentR.o cdf.o cumulativeR.o reference.o sequentialR.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/GLMcat.Rcheck/00LOCK-GLMcat/00new/GLMcat/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GLMcat)