Install log for 'Cyclops'

* installing *source* package ‘Cyclops’ ...
** package ‘Cyclops’ successfully unpacked and MD5 sums checked
** using staged installation
no CUDA installation found; only compile host code
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/CcdInterface.cpp -o cyclops/CcdInterface.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/CompressedDataMatrix.cpp -o cyclops/CompressedDataMatrix.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/CyclicCoordinateDescent.cpp -o cyclops/CyclicCoordinateDescent.o
cyclops/CyclicCoordinateDescent.cpp:1088:22: warning: lambda capture 'lastObjFunc' is not used [-Wunused-lambda-capture]
        auto cycle = [this,&lastObjFunc,&lastObjFuncVec,&iteration,algorithmType,&allDelta,&doItAll] {
                          ~~^~~~~~~~~~~
cyclops/CyclicCoordinateDescent.cpp:1088:35: warning: lambda capture 'lastObjFuncVec' is not used [-Wunused-lambda-capture]
        auto cycle = [this,&lastObjFunc,&lastObjFuncVec,&iteration,algorithmType,&allDelta,&doItAll] {
                                       ~~^~~~~~~~~~~~~~
2 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/ModelData.cpp -o cyclops/ModelData.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/Timer.cpp -o cyclops/Timer.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/drivers/AbstractCrossValidationDriver.cpp -o cyclops/drivers/AbstractCrossValidationDriver.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/drivers/AbstractDriver.cpp -o cyclops/drivers/AbstractDriver.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/drivers/AbstractSelector.cpp -o cyclops/drivers/AbstractSelector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/drivers/AutoSearchCrossValidationDriver.cpp -o cyclops/drivers/AutoSearchCrossValidationDriver.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/drivers/BootstrapDriver.cpp -o cyclops/drivers/BootstrapDriver.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/drivers/BootstrapSelector.cpp -o cyclops/drivers/BootstrapSelector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/drivers/CrossValidationSelector.cpp -o cyclops/drivers/CrossValidationSelector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/drivers/WeightBasedSelector.cpp -o cyclops/drivers/WeightBasedSelector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/drivers/GridSearchCrossValidationDriver.cpp -o cyclops/drivers/GridSearchCrossValidationDriver.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/drivers/HierarchyAutoSearchCrossValidationDriver.cpp -o cyclops/drivers/HierarchyAutoSearchCrossValidationDriver.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/drivers/HierarchyGridSearchCrossValidationDriver.cpp -o cyclops/drivers/HierarchyGridSearchCrossValidationDriver.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/drivers/ProportionSelector.cpp -o cyclops/drivers/ProportionSelector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/engine/AbstractModelSpecifics.cpp -o cyclops/engine/AbstractModelSpecifics.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c utils/HParSearch.cpp -o utils/HParSearch.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c IsSorted.cpp -o IsSorted.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppModelData.cpp -o RcppModelData.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppCyclopsInterface.cpp -o RcppCyclopsInterface.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppGpuInterface.cpp -o RcppGpuInterface.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppIsSorted.cpp -o RcppIsSorted.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/priors/CovariatePrior.cpp -o cyclops/priors/CovariatePrior.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -Icyclops -DR_BUILD -DDOUBLE_PRECISION -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include   -g1 -fPIC  -falign-functions=64 -Wall -g -O2   -c cyclops/io/InputReader.cpp -o cyclops/io/InputReader.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o Cyclops.so cyclops/CcdInterface.o cyclops/CompressedDataMatrix.o cyclops/CyclicCoordinateDescent.o cyclops/ModelData.o cyclops/Timer.o cyclops/drivers/AbstractCrossValidationDriver.o cyclops/drivers/AbstractDriver.o cyclops/drivers/AbstractSelector.o cyclops/drivers/AutoSearchCrossValidationDriver.o cyclops/drivers/BootstrapDriver.o cyclops/drivers/BootstrapSelector.o cyclops/drivers/CrossValidationSelector.o cyclops/drivers/WeightBasedSelector.o cyclops/drivers/GridSearchCrossValidationDriver.o cyclops/drivers/HierarchyAutoSearchCrossValidationDriver.o cyclops/drivers/HierarchyGridSearchCrossValidationDriver.o cyclops/drivers/ProportionSelector.o cyclops/engine/AbstractModelSpecifics.o utils/HParSearch.o IsSorted.o RcppExports.o RcppModelData.o RcppCyclopsInterface.o RcppGpuInterface.o RcppIsSorted.o cyclops/priors/CovariatePrior.o cyclops/io/InputReader.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/Cyclops.Rcheck/00LOCK-Cyclops/00new/Cyclops/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Cyclops)