• using R version 4.4.0 alpha (2024-03-31 r86238)
• using platform: aarch64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.4
• using session charset: UTF-8
• checking for file ‘CNVScope/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘CNVScope’ version ‘3.7.2’
• checking package namespace information ... OK
• checking package dependencies ... NOTE Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘CNVScope’ can be installed ... [32s/34s] OK See the install log for details.
• checking installed package size ... NOTE   installed size is 5.2Mb   sub-directories of 1Mb or more:     doc 3.2Mb     extdata 1.7Mb
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [10s/10s] OK
• checking whether the package can be loaded with stated dependencies ... [9s/10s] OK
• checking whether the package can be unloaded cleanly ... [10s/11s] OK
• checking whether the namespace can be loaded with stated dependencies ... [10s/11s] OK
• checking whether the namespace can be unloaded cleanly ... [10s/11s] OK
• checking loading without being on the library search path ... [10s/12s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [23s/27s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [19s/21s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [47s/53s] OK
• checking PDF version of manual ... [4s/4s] OK
• DONE Status: 2 NOTEs
• using check arguments '--no-clean-on-error '