• using R version 4.4.2 (2024-10-31)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-6) 14.2.0     GNU Fortran (Debian 14.2.0-6) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘vegclust/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘vegclust’ version ‘2.0.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘vegclust’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [19s/24s] OK
• checking Rd files ... [1s/1s] NOTE checkRd: (-1) as.vegclust.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.vegclust.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.vegclust.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.vegclust.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.vegclust.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.vegclust.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.vegclust.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.vegclust.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.vegclust.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.vegclust.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) hier.vegclust.Rd:22: Lost braces; missing escapes or markup?     22 | For \code{hier.vegclust} and {random.vegclust}, a site (rows) by species (columns) matrix or data frame. For \code{hier.vegclustdist} and {random.vegclustdist}, a square distance matrix.        | ^ checkRd: (-1) hier.vegclust.Rd:22: Lost braces; missing escapes or markup?     22 | For \code{hier.vegclust} and {random.vegclust}, a site (rows) by species (columns) matrix or data frame. For \code{hier.vegclustdist} and {random.vegclustdist}, a square distance matrix.        | ^ checkRd: (-1) incr.vegclust.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) incr.vegclust.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) incr.vegclust.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) incr.vegclust.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) vegclust.Rd:38: Lost braces in \itemize; meant \describe ? checkRd: (-1) vegclust.Rd:39: Lost braces in \itemize; meant \describe ? checkRd: (-1) vegclust.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) vegclust.Rd:41: Lost braces in \itemize; meant \describe ? checkRd: (-1) vegclust.Rd:42: Lost braces in \itemize; meant \describe ? checkRd: (-1) vegclust.Rd:43: Lost braces in \itemize; meant \describe ? checkRd: (-1) vegclust.Rd:44: Lost braces in \itemize; meant \describe ? checkRd: (-1) vegclust.Rd:45: Lost braces in \itemize; meant \describe ? checkRd: (-1) vegclust.Rd:46: Lost braces in \itemize; meant \describe ? checkRd: (-1) vegclust.Rd:47: Lost braces in \itemize; meant \describe ?
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [10s/14s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [18s/26s] OK
• checking PDF version of manual ... [6s/9s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE