- using R version 4.4.1 (2024-06-14)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.2.0-25) 13.2.0
GNU Fortran (Debian 13.2.0-25) 13.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘tidysdm/DESCRIPTION’ ... OK
- this is package ‘tidysdm’ version ‘0.9.4’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘tidysdm’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [6s/7s] OK
- checking whether the package can be loaded with stated dependencies ... [6s/7s] OK
- checking whether the package can be unloaded cleanly ... [6s/7s] OK
- checking whether the namespace can be loaded with stated dependencies ... [5s/6s] OK
- checking whether the namespace can be unloaded cleanly ... [6s/7s] OK
- checking loading without being on the library search path ... [7s/7s] OK
- checking whether startup messages can be suppressed ... [7s/8s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [33s/36s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [8s/9s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [17s/19s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [44s/51s] OK
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [43s/51s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [408s/464s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘a0_tidysdm_overview.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-3-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24420 bytes
Input file size = 24522 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18497
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18497
Output IDAT size = 18497 bytes (5923 bytes decrease)
Output file size = 18575 bytes (5947 bytes = 24.25% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_thin_by_cell-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26290 bytes
Input file size = 26404 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19760
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19760
Output IDAT size = 19760 bytes (6530 bytes decrease)
Output file size = 19838 bytes (6566 bytes = 24.87% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_thin_by_dist-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23579 bytes
Input file size = 23681 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17846
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17846
Output IDAT size = 17846 bytes (5733 bytes decrease)
Output file size = 17924 bytes (5757 bytes = 24.31% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_sample_pseudoabs-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52787 bytes
Input file size = 52937 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38441
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38441
Output IDAT size = 38441 bytes (14346 bytes decrease)
Output file size = 38519 bytes (14418 bytes = 27.24% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-7-1.png
672x1056 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 116119 bytes
Input file size = 116365 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102058
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102058
Output IDAT size = 102058 bytes (14061 bytes decrease)
Output file size = 102136 bytes (14229 bytes = 12.23% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-10-1.png
672x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 138515 bytes
Input file size = 138785 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101422
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101422
Output IDAT size = 101422 bytes (37093 bytes decrease)
Output file size = 101500 bytes (37285 bytes = 26.87% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/training_cv-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 72790 bytes
Input file size = 72964 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63020
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63020
Output IDAT size = 63020 bytes (9770 bytes decrease)
Output file size = 63098 bytes (9866 bytes = 13.52% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/autoplot_models-1.png
672x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32170 bytes
Input file size = 32284 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25299
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25299
Output IDAT size = 25299 bytes (6871 bytes decrease)
Output file size = 25377 bytes (6907 bytes = 21.39% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/autoplot_ens-1.png
672x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28366 bytes
Input file size = 28480 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22741
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22741
Output IDAT size = 22741 bytes (5625 bytes decrease)
Output file size = 22819 bytes (5661 bytes = 19.88% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_present-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31387 bytes
Input file size = 31501 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26396
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26396
Output IDAT size = 26396 bytes (4991 bytes decrease)
Output file size = 26474 bytes (5027 bytes = 15.96% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_present_best-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32059 bytes
Input file size = 32173 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27008
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27008
Output IDAT size = 27008 bytes (5051 bytes decrease)
Output file size = 27086 bytes (5087 bytes = 15.81% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-16-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25853 bytes
Input file size = 25967 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19519
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19519
Output IDAT size = 19519 bytes (6334 bytes decrease)
Output file size = 19597 bytes (6370 bytes = 24.53% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_future-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20506 bytes
Input file size = 20608 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17790
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17790
Output IDAT size = 17790 bytes (2716 bytes decrease)
Output file size = 17868 bytes (2740 bytes = 13.30% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-24-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5039 bytes
Input file size = 5894 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4490
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4490
Output IDAT size = 4490 bytes (549 bytes decrease)
Output file size = 4568 bytes (1326 bytes = 22.50% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-27-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20534 bytes
Input file size = 20636 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18009
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18009
Output IDAT size = 18009 bytes (2525 bytes decrease)
Output file size = 18087 bytes (2549 bytes = 12.35% decrease)
--- finished re-building ‘a0_tidysdm_overview.Rmd’
--- re-building ‘a1_palaeodata_application.Rmd’ using rmarkdown
Quitting from lines 71-76 [cast_to_sf] (a1_palaeodata_application.Rmd)
Error: processing vignette 'a1_palaeodata_application.Rmd' failed with diagnostics:
Discrete values supplied to continuous scale.
ℹ Example values: NA, NA, NA, NA, and NA
--- failed re-building ‘a1_palaeodata_application.Rmd’
--- re-building ‘a2_tidymodels_additions.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/vip-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18841 bytes
Input file size = 18943 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15936
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15936
Output IDAT size = 15936 bytes (2905 bytes decrease)
Output file size = 16014 bytes (2929 bytes = 15.46% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/pdp-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20584 bytes
Input file size = 20686 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16279
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16279
Output IDAT size = 16279 bytes (4305 bytes decrease)
Output file size = 16357 bytes (4329 bytes = 20.93% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/profile-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34598 bytes
Input file size = 34724 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28003
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28003
Output IDAT size = 28003 bytes (6595 bytes decrease)
Output file size = 28081 bytes (6643 bytes = 19.13% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/initial_split-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 66937 bytes
Input file size = 67111 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55145
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55145
Output IDAT size = 55145 bytes (11792 bytes decrease)
Output file size = 55223 bytes (11888 bytes = 17.71% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/training_cv-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 61229 bytes
Input file size = 61391 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52784
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52784
Output IDAT size = 52784 bytes (8445 bytes decrease)
Output file size = 52862 bytes (8529 bytes = 13.89% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18566 bytes
Input file size = 18668 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14190
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14190
Output IDAT size = 14190 bytes (4376 bytes decrease)
Output file size = 14268 bytes (4400 bytes = 23.57% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/build_stack-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13856 bytes
Input file size = 13946 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11836
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11836
Output IDAT size = 11836 bytes (2020 bytes decrease)
Output file size = 11914 bytes (2032 bytes = 14.57% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/plot_present-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29019 bytes
Input file size = 29133 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24469
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24469
Output IDAT size = 24469 bytes (4550 bytes decrease)
Output file size = 24547 bytes (4586 bytes = 15.74% decrease)
--- finished re-building ‘a2_tidymodels_additions.Rmd’
--- re-building ‘a3_troubleshooting.Rmd’ using rmarkdown
--- finished re-building ‘a3_troubleshooting.Rmd’
SUMMARY: processing the following file failed:
‘a1_palaeodata_application.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [8s/12s] OK
- checking HTML version of manual ... [3s/5s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR