• using R version 4.4.2 (2024-10-31)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-12) 14.2.0     GNU Fortran (Debian 14.2.0-12) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘ref.ICAR/DESCRIPTION’ ... OK
• this is package ‘ref.ICAR’ version ‘2.0.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘ref.ICAR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the package can be unloaded cleanly ... [4s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
• checking loading without being on the library search path ... [4s/5s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [19s/25s] OK
• checking Rd files ... [4s/5s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [5s/6s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [33s/43s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘ref-icar-vignette.Rmd’ using rmarkdown Warning in eng_r(options) :   Failed to tidy R code in chunk 'unnamed-chunk-1'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) :   Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) :   Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-3-1.png 672x528 pixels, 3x8 bits/pixel, RGB Input IDAT size = 55347 bytes Input file size = 55497 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45467   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45467 Output IDAT size = 45467 bytes (9880 bytes decrease) Output file size = 45545 bytes (9952 bytes = 17.93% decrease) Warning in eng_r(options) :   Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-4-1.png 672x528 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51884 bytes Input file size = 52034 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43075   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43075 Output IDAT size = 43075 bytes (8809 bytes decrease) Output file size = 43153 bytes (8881 bytes = 17.07% decrease) Warning in eng_r(options) :   Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) :   Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) :   Failed to tidy R code in chunk 'unnamed-chunk-7'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) :   Failed to tidy R code in chunk 'unnamed-chunk-8'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-8-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 30587 bytes Input file size = 31481 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28564   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 28555   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 25747   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25165   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25165 Output IDAT size = 25165 bytes (5422 bytes decrease) Output file size = 25243 bytes (6238 bytes = 19.82% decrease) Warning in eng_r(options) :   Failed to tidy R code in chunk 'unnamed-chunk-9'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) :   Failed to tidy R code in chunk 'unnamed-chunk-10'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-10-1.png 672x528 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52560 bytes Input file size = 52710 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43044   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43044 Output IDAT size = 43044 bytes (9516 bytes decrease) Output file size = 43122 bytes (9588 bytes = 18.19% decrease) Warning in eng_r(options) :   Failed to tidy R code in chunk 'unnamed-chunk-11'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-11-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 29088 bytes Input file size = 29982 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27075   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24767   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 24237   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 24237 Output IDAT size = 24237 bytes (4851 bytes decrease) Output file size = 24315 bytes (5667 bytes = 18.90% decrease) Warning in eng_r(options) :   Failed to tidy R code in chunk 'unnamed-chunk-12'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Quitting from lines 269-276 [unnamed-chunk-12] (ref-icar-vignette.Rmd) Error: processing vignette 'ref-icar-vignette.Rmd' failed with diagnostics: `dsn` must point to a source, not an empty string. --- failed re-building ‘ref-icar-vignette.Rmd’ SUMMARY: processing the following file failed:   ‘ref-icar-vignette.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR