• using R version 4.4.2 (2024-10-31)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘plasma/DESCRIPTION’ ... OK
• this is package ‘plasma’ version ‘1.1.3’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘plasma’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [6s/7s] OK
• checking whether the package can be loaded with stated dependencies ... [5s/6s] OK
• checking whether the package can be unloaded cleanly ... [5s/8s] OK
• checking whether the namespace can be loaded with stated dependencies ... [5s/8s] OK
• checking whether the namespace can be unloaded cleanly ... [6s/8s] OK
• checking loading without being on the library search path ... [6s/7s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [28s/40s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [38s/58s] OK Examples with CPU (user + system) or elapsed time > 5s                             user system elapsed 02-fitCoxModel 5.319 0.208 8.357 04-plasma-class 4.968 0.250 8.155 05-Contribution-class 4.366 0.177 6.432 06-CombinedWeights-class 4.382 0.104 7.379 04-plasmaPredictions-class 4.252 0.124 6.745 03-manyCoxModels 3.959 0.120 6.340
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [61s/81s] OK   Running ‘test01-MO.R’ [11s/15s]   Running ‘test02-fitCox.R’ [10s/14s]   Running ‘test03-multiplePLS.R’ [14s/18s]   Running ‘test04-plasma.R’ [13s/17s]   Running ‘test05-interpret.R’ [13s/18s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s/2s] OK
• checking PDF version of manual ... [5s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: OK