- using R version 4.4.2 (2024-10-31)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-8) 14.2.0
GNU Fortran (Debian 14.2.0-8) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘pcalg/DESCRIPTION’ ... OK
- this is package ‘pcalg’ version ‘2.7-12’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘pcalg’ can be installed ... OK
See the install log for details.
- used C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
- used C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [2s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [43s/55s] OK
- checking Rd files ... [2s/2s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [1s/1s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in shell scripts ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [29s/36s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ida 4.666 0.101 5.573
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [140s/178s] OK
Running ‘test_LINGAM.R’ [3s/4s]
Running ‘test_addBgKnowledge.R’ [2s/3s]
Running ‘test_adjustment.R’ [4s/5s]
Running ‘test_ages.R’ [3s/4s]
Running ‘test_amat2dag.R’ [2s/2s]
Running ‘test_arges.R’ [2s/2s]
Running ‘test_backdoor.R’ [8s/10s]
Comparing ‘test_backdoor.Rout’ to ‘test_backdoor.Rout.save’ ... OK
Running ‘test_bicscore.R’ [2s/3s]
Running ‘test_causalEffect.R’ [2s/2s]
Running ‘test_coercion.R’ [2s/3s]
Running ‘test_compareGraphs.R’ [2s/2s]
Running ‘test_dag2cpdag.R’ [2s/3s]
Running ‘test_dag2essgraph.R’ [2s/3s]
Running ‘test_displayAmat.R’ [2s/3s]
Running ‘test_dsep.R’ [2s/3s]
Running ‘test_dsepAM.R’ [2s/2s]
Running ‘test_dsepAMTest.R’ [2s/3s]
Running ‘test_fci.R’ [2s/2s]
Running ‘test_fciPlus.R’ [2s/3s]
Running ‘test_gSquareBin.R’ [2s/2s]
Running ‘test_gSquareDis.R’ [3s/4s]
Running ‘test_gac.R’ [4s/5s]
Running ‘test_getNextSet.R’ [2s/2s]
Running ‘test_gies.R’ [4s/5s]
Running ‘test_ida.R’ [10s/13s]
Running ‘test_idaFast.R’ [5s/7s]
Running ‘test_isValidGraph.R’ [4s/5s]
Running ‘test_jointIda.R’ [2s/3s]
Running ‘test_mat2targets.R’ [2s/3s]
Running ‘test_optAdjSet.R’ [3s/3s]
Running ‘test_opttarget.R’ [2s/2s]
Running ‘test_pag2anc.R’ [2s/2s]
Running ‘test_pag2conf.R’ [2s/2s]
Running ‘test_pag2edge.R’ [2s/2s]
Running ‘test_pc.R’ [3s/3s]
Running ‘test_pcSelect.R’ [3s/5s]
Running ‘test_pcalg2dagitty.R’ [2s/3s]
Running ‘test_pcorOrder.R’ [2s/2s]
Running ‘test_pdag2allDags.R’ [2s/2s]
Running ‘test_pdag2dag.R’ [2s/2s]
Running ‘test_possDeAn.R’ [2s/2s]
Running ‘test_randDAG.R’ [3s/4s]
Running ‘test_randomDAG.R’ [2s/2s]
Running ‘test_rfci.R’ [4s/5s]
Running ‘test_rmvDAG.R’ [2s/2s]
Running ‘test_searchAM.R’ [2s/2s]
Running ‘test_shd.R’ [2s/2s]
Running ‘test_skeleton.R’ [4s/5s]
Running ‘test_udag2pag.R’ [2s/2s]
Running ‘test_udag2pdag.R’ [7s/8s]
Running ‘test_wgtMatrix.R’ [2s/2s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [29s/38s] OK
- checking PDF version of manual ... [12s/16s] OK
- checking HTML version of manual ... [8s/13s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: OK