• using R version 4.4.3 (2025-02-28)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-16) 14.2.0     GNU Fortran (Debian 14.2.0-16) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘mulea/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘mulea’ version ‘1.1.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘mulea’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [15s/19s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [25s/75s] OK Examples with CPU (user + system) or elapsed time > 5s                  user system elapsed plot_graph 3.801 0.131 10.512 plot_barplot 3.076 0.097 9.356 plot_lollipop 3.122 0.011 9.022 reshape_results 2.960 0.157 9.327 plot_heatmap 3.069 0.040 10.321 run_test 1.098 0.021 12.733 ora-class 0.547 0.042 5.497
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [5s/89s] OK   Running ‘testthat.R’ [5s/89s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [20s/64s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘mulea.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/mulea.Rcheck/vign_test/mulea/vignettes/mulea_files/figure-html/lollipop_plot_ora-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20792 bytes Input file size = 20894 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17143   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17143 Output IDAT size = 17143 bytes (3649 bytes decrease) Output file size = 17221 bytes (3673 bytes = 17.58% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/mulea.Rcheck/vign_test/mulea/vignettes/mulea_files/figure-html/bar_plot_ora-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17844 bytes Input file size = 17946 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14901   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14901 Output IDAT size = 14901 bytes (2943 bytes decrease) Output file size = 14979 bytes (2967 bytes = 16.53% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/mulea.Rcheck/vign_test/mulea/vignettes/mulea_files/figure-html/network_plot_ora-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 45235 bytes Input file size = 45373 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35661   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35661 Output IDAT size = 35661 bytes (9574 bytes decrease) Output file size = 35739 bytes (9634 bytes = 21.23% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/mulea.Rcheck/vign_test/mulea/vignettes/mulea_files/figure-html/heatmap_ora-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38919 bytes Input file size = 39045 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26103   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26103 Output IDAT size = 26103 bytes (12816 bytes decrease) Output file size = 26181 bytes (12864 bytes = 32.95% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/mulea.Rcheck/vign_test/mulea/vignettes/mulea_files/figure-html/network_plot_gsea-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38836 bytes Input file size = 38962 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30677   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30677 Output IDAT size = 30677 bytes (8159 bytes decrease) Output file size = 30755 bytes (8207 bytes = 21.06% decrease) Quitting from lines 566-568 [DE1] (mulea.Rmd) Error: processing vignette 'mulea.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘mulea.Rmd’ SUMMARY: processing the following file failed:   ‘mulea.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR