• using R version 4.4.2 (2024-10-31)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘motmot/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘motmot’ version ‘2.1.3’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘motmot’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
• used C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
• checking C++ specification ... NOTE   Specified C++11: please drop specification unless essential
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [30s/41s] OK
• checking Rd files ... [1s/1s] NOTE checkRd: (-1) transformPhylo.MCMC.Rd:82: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.MCMC.Rd:83: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.MCMC.Rd:84: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.MCMC.Rd:85: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.MCMC.Rd:86: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.MCMC.Rd:87: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ML.Rd:119: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ML.Rd:120: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ML.Rd:121: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ML.Rd:122: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ML.Rd:123: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ML.Rd:124: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ML.Rd:125: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ML.Rd:126: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ML.Rd:127: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ML.Rd:128: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ML.Rd:129: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ML.Rd:130: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ML.Rd:131: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ML.Rd:132: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ML.Rd:133: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.Rd:97: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.Rd:98: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.Rd:99: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.Rd:100: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ll.Rd:100: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ll.Rd:101: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ll.Rd:102: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ll.Rd:103: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ll.Rd:104: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ll.Rd:105: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ll.Rd:106: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ll.Rd:107: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ll.Rd:108: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ll.Rd:109: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ll.Rd:110: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ll.Rd:111: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ll.Rd:112: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ll.Rd:113: Lost braces in \itemize; meant \describe ? checkRd: (-1) transformPhylo.ll.Rd:114: Lost braces in \itemize; meant \describe ?
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [26s/36s] OK Examples with CPU (user + system) or elapsed time > 5s                    user system elapsed transformPhylo.ML 3.972 0.004 5.707 RatePhylo.allCI 3.845 0.040 5.574
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [112s/156s] OK
• checking PDF version of manual ... [6s/9s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs