- using R version 4.4.1 (2024-06-14)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-6) 14.2.0
GNU Fortran (Debian 14.2.0-6) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘mapme.biodiversity/DESCRIPTION’ ... OK
- this is package ‘mapme.biodiversity’ version ‘0.9.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘mapme.biodiversity’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [7s/9s] OK
- checking whether the package can be loaded with stated dependencies ... [7s/8s] OK
- checking whether the package can be unloaded cleanly ... [7s/8s] OK
- checking whether the namespace can be loaded with stated dependencies ... [7s/8s] OK
- checking whether the namespace can be unloaded cleanly ... [7s/8s] OK
- checking loading without being on the library search path ... [7s/9s] OK
- checking whether startup messages can be suppressed ... [8s/9s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [42s/59s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [8s/12s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [65s/127s] ERROR
Running ‘testthat.R’ [64s/127s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(mapme.biodiversity)
>
> options(pillar.advice = FALSE)
> mapme_options(verbose = FALSE)
> test_check("mapme.biodiversity")
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
You agreed to abide to ACLED's Terms of Use (https://acleddata.com/terms-of-use/).
Resource 'gsw_time_series' is already available.
Resource 'gfw_treecover' is already available.
Resource 'gfw_lossyear' is already available.
Resource 'key_biodiversity_areas' is already available.
[ FAIL 1 | WARN 0 | SKIP 38 | PASS 573 ]
══ Skipped tests (38) ══════════════════════════════════════════════════════════
• On CRAN (38): 'test-calc_burned_area.R:2:3',
'test-calc_drought_indicator.R:49:3', 'test-calc_elevation.R:39:3',
'test-calc_landcover.R:2:3', 'test-calc_population_count.R:34:3',
'test-calc_precipitation_chelsa.R:36:3',
'test-calc_precipitation_chirps.R:2:3', 'test-calc_precipitation_wc.R:35:3',
'test-calc_slope.R:51:3', 'test-calc_soilproperties.R:2:3',
'test-calc_temperature_max_wc.R:37:3', 'test-calc_temperature_min_wc.R:37:3',
'test-calc_traveltime.R:38:3', 'test-calc_traveltime_2000.R:35:3',
'test-calc_treecover_area.R:97:3',
'test-calc_treecover_area_and_emissions.R:30:3',
'test-calc_treecoverloss_emissions.R:27:3', 'test-calc_tri.R:33:3',
'test-get_carbon.R:28:3', 'test-get_chirps.R:2:3',
'test-get_esalandcover.R:2:3', 'test-get_fritz_et_al.R:2:3',
'test-get_gfw_emissions.R:2:3', 'test-get_gfw_lossyear.R:2:3',
'test-get_gfw_treecover.R:7:3', 'test-get_gmw.R:2:3', 'test-get_gsw.R:2:3',
'test-get_hfp.R:10:3', 'test-get_mcd64A1.R:2:3', 'test-get_nasa_grace.R:2:3',
'test-get_nasa_srtm.R:2:3', 'test-get_nelson_et_al.R:2:3',
'test-get_resources.R:2:3', 'test-get_soilgrids.R:2:3',
'test-get_teow.R:2:3', 'test-get_ucdp_ged.R:3:3', 'test-get_worldpop.R:2:3',
'test-ipbes.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-calc_indicator.R:262:3'): .read_vector works ───────────────────
Error in `st_sf(x, ..., agr = agr, sf_column_name = sf_column_name)`: no simple features geometry column present
Backtrace:
▆
1. └─mapme.biodiversity::make_footprints(v, what = "vector") at test-calc_indicator.R:262:3
2. ├─sf::st_as_sf(tibble::as_tibble(srcs))
3. └─sf:::st_as_sf.data.frame(tibble::as_tibble(srcs))
4. └─sf::st_sf(x, ..., agr = agr, sf_column_name = sf_column_name)
[ FAIL 1 | WARN 0 | SKIP 38 | PASS 573 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [15s/19s] OK
- checking PDF version of manual ... [7s/9s] OK
- checking HTML version of manual ... [3s/5s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR