* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘kmc’ ...
** package ‘kmc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-6) 14.2.0’
using C++ compiler: ‘g++-14 (Debian 14.2.0-6) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYJS1PL/R.INSTALL2a1e9138b3e7d2/kmc/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExport.cpp -o RcppExport.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c kmc.cpp -o kmc.o
kmc.cpp: In function ‘void kmc_native(double*, double*, double*, int*)’:
kmc.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  239 |         for (size_t j =0;j < n; j++) w[j] = 0.;
      |                          ~~^~~
kmc.cpp:243:18: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  243 |         while (i < n - 1){
      |                ~~^~~~~~~
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/include/R.h:73,
                 from common.h:4,
                 from kmc.cpp:1:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include/Rcpp/exceptions/cpp11/exceptions.h: In function ‘void Rcpp::Rf_warning(const char*, Args&& ...) [with Args = {const char*}]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/R_ext/Error.h:69:17: warning: infinite recursion detected [-Winfinite-recursion]
   69 | #define warning Rf_warning
      |                 ^~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include/Rcpp/exceptions/cpp11/exceptions.h:46:13: note: in expansion of macro ‘warning’
   46 | inline void warning(const char* fmt, Args&&... args ) {
      |             ^~~~~~~
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include/Rcpp/exceptions.h:180,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:130,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include/Rcpp.h:27,
                 from common.h:5:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include/Rcpp/exceptions/cpp11/exceptions.h:47:15: note: recursive call
   47 |     Rf_warning("%s", tfm::format(fmt, std::forward<Args>(args)... ).c_str());
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c kmc_init.c -o kmc_init.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c surv2.c -o surv2.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o kmc.so RcppExport.o kmc.o kmc_init.o surv2.o -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYJS1PL/R.INSTALL2a1e9138b3e7d2/kmc/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYJS1PL/R.INSTALL2a1e9138b3e7d2/kmc/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYJS1PL/R.INSTALL2a1e9138b3e7d2/kmc/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-kmc/00new/kmc/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (kmc)