* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘dynsurv’ ...
** package ‘dynsurv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiBL6EW/R.INSTALL3988514b0cf89/dynsurv/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I. -fpic -g -O2 -Wall -pedantic -mtune=native -c IntRegPar.cpp -o IntRegPar.o
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/arg.hpp:25,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/placeholders.hpp:24,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/apply.hpp:24,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/serialization/array_optimization.hpp:18,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/serialization/array_wrapper.hpp:21,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/serialization/array.hpp:26,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/storage.hpp:22,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/vector.hpp:21,
from ublas.h:14,
from IntRegPar.h:15,
from IntRegPar.cpp:10:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
| -
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
| -
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| -
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
| -
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c arms.c -o arms.o
arms.c: In function ‘meet’:
arms.c:769:48: warning: ‘dr’ may be used uninitialized [-Wmaybe-uninitialized]
769 | q->y = (dl * q->pr->y + dr * q->pl->y + dl * dr)/(dl + dr);
| ~~~^~~~
arms.c:697:23: note: ‘dr’ was declared here
697 | double gl,gr,grl,dl,dr;
| ^~
arms.c: In function ‘invert’:
arms.c:448:19: warning: ‘xr’ may be used uninitialized [-Wmaybe-uninitialized]
448 | if ((p->x < xl) || (p->x > xr))return(1);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~
arms.c:393:23: note: ‘xr’ was declared here
393 | double u, xl = 0.0, xr,yl,yr,eyl,eyr,prop; //,z;
| ^~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I. -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesCox.cpp -o bayesCox.o
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/arg.hpp:25,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/placeholders.hpp:24,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/apply.hpp:24,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/serialization/array_optimization.hpp:18,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/serialization/array_wrapper.hpp:21,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/serialization/array.hpp:26,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/storage.hpp:22,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/numeric/ublas/vector.hpp:21,
from ublas.h:14,
from IntRegPar.h:15,
from TimeIndepCoxModel.h:16,
from bayesCox.cpp:3:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
| -
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
| -
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| -
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
| -
In file included from TimeIndepCoxModel.h:17:
TimeIndepModel.h: In instantiation of ‘void ir::TimeIndepModel<Prior, Par>::sampleBeta(const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const ir::NormalPrior&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>; Par = ir::TimeIndepCoxPar]’:
TimeIndepCoxModel.h:78:19: required from ‘void ir::TimeIndepCoxModel<Prior>::gibbsKernel(const Prior&, ir::TimeIndepCoxPar&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>]’
78 | this->sampleBeta(par.lambda, dNMat, YMat, omega, prior.coef_prior, par.beta);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior> >; Prior_type = ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>; Size = long unsigned int]’
94 | pm_->gibbsKernel(prior, par);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
bayesCox.cpp:51:18: required from here
51 | gs.runGibbs(prior, static_cast<bool>(p_verbose[0]), p_nReport[0]);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
TimeIndepModel.h:65:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
65 | int err;
| ^~~
TimeIndepModel.h: In instantiation of ‘void ir::TimeIndepModel<Prior, Par>::sampleBeta(const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const ir::NormalPrior&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>; Par = ir::TimeIndepCoxPar]’:
TimeIndepCoxModel.h:78:19: required from ‘void ir::TimeIndepCoxModel<Prior>::gibbsKernel(const Prior&, ir::TimeIndepCoxPar&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>]’
78 | this->sampleBeta(par.lambda, dNMat, YMat, omega, prior.coef_prior, par.beta);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior> >; Prior_type = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>; Size = long unsigned int]’
94 | pm_->gibbsKernel(prior, par);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
bayesCox.cpp:79:18: required from here
79 | gs.runGibbs(prior, static_cast<bool>(p_verbose[0]), p_nReport[0]);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
TimeIndepModel.h:65:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
65 | int err;
| ^~~
In file included from TimeVaryingCoxModel.h:17,
from bayesCox.cpp:4:
TimeVaryingModel.h: In instantiation of ‘void ir::TimeVaryingModel<Prior, Par>::sampleBeta(const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const ir::NormalProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>; Par = ir::TimeVaryingCoxPar]’:
TimeVaryingCoxModel.h:78:19: required from ‘void ir::TimeVaryingCoxModel<Prior>::gibbsKernel(const Prior&, ir::TimeVaryingCoxPar&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>]’
78 | this->sampleBeta(par.lambda, dNMat, YMat, omega, prior.coef_prior, par.beta, par.nu);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >; Prior_type = ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>; Size = long unsigned int]’
94 | pm_->gibbsKernel(prior, par);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
bayesCox.cpp:108:18: required from here
108 | gs.runGibbs(prior, static_cast<bool>(p_verbose[0]), p_nReport[0]);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
TimeVaryingModel.h:85:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
85 | int err;
| ^~~
TimeVaryingModel.h: In instantiation of ‘void ir::TimeVaryingModel<Prior, Par>::sampleBeta(const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const ir::NormalInvGammaProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>; Par = ir::TimeVaryingCoxPar]’:
TimeVaryingCoxModel.h:78:19: required from ‘void ir::TimeVaryingCoxModel<Prior>::gibbsKernel(const Prior&, ir::TimeVaryingCoxPar&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>]’
78 | this->sampleBeta(par.lambda, dNMat, YMat, omega, prior.coef_prior, par.beta, par.nu);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >; Prior_type = ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>; Size = long unsigned int]’
94 | pm_->gibbsKernel(prior, par);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
bayesCox.cpp:137:18: required from here
137 | gs.runGibbs(prior, static_cast<bool>(p_verbose[0]), p_nReport[0]);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
TimeVaryingModel.h:162:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
162 | int err;
| ^~~
TimeVaryingModel.h: In instantiation of ‘void ir::TimeVaryingModel<Prior, Par>::sampleBeta(const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const ir::NormalProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>; Par = ir::TimeVaryingCoxPar]’:
TimeVaryingCoxModel.h:78:19: required from ‘void ir::TimeVaryingCoxModel<Prior>::gibbsKernel(const Prior&, ir::TimeVaryingCoxPar&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>]’
78 | this->sampleBeta(par.lambda, dNMat, YMat, omega, prior.coef_prior, par.beta, par.nu);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >; Prior_type = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>; Size = long unsigned int]’
94 | pm_->gibbsKernel(prior, par);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
bayesCox.cpp:168:18: required from here
168 | gs.runGibbs(prior, static_cast<bool>(p_verbose[0]), p_nReport[0]);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
TimeVaryingModel.h:85:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
85 | int err;
| ^~~
TimeVaryingModel.h: In instantiation of ‘void ir::TimeVaryingModel<Prior, Par>::sampleBeta(const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const ir::NormalInvGammaProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>; Par = ir::TimeVaryingCoxPar]’:
TimeVaryingCoxModel.h:78:19: required from ‘void ir::TimeVaryingCoxModel<Prior>::gibbsKernel(const Prior&, ir::TimeVaryingCoxPar&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>]’
78 | this->sampleBeta(par.lambda, dNMat, YMat, omega, prior.coef_prior, par.beta, par.nu);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >; Prior_type = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>; Size = long unsigned int]’
94 | pm_->gibbsKernel(prior, par);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
bayesCox.cpp:197:18: required from here
197 | gs.runGibbs(prior, static_cast<bool>(p_verbose[0]), p_nReport[0]);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
TimeVaryingModel.h:162:7: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
162 | int err;
| ^~~
In file included from DynamicCoxModel.h:17,
from bayesCox.cpp:5:
DynamicModel.h: In instantiation of ‘void ir::DynamicModel<Prior, Par>::sampleBeta(Size, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::vector<double>&, const ir::NormalProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>; Par = ir::DynamicCoxPar; Size = long unsigned int]’:
DynamicCoxModel.h:136:23: required from ‘void ir::DynamicCoxModel<Prior>::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>]’
136 | this->sampleBeta(j, dNMat, YMat, par.lambda, par.jump, omega,
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
137 | prior.coef_prior, par.beta, par.nu);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >; Prior_type = ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>; Size = long unsigned int]’
94 | pm_->gibbsKernel(prior, par);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
bayesCox.cpp:229:18: required from here
229 | gs.runGibbs(prior, static_cast<bool>(p_verbose[0]), p_nReport[0]);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DynamicModel.h:355:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
355 | int err;
| ^~~
DynamicModel.h: In instantiation of ‘void ir::DynamicModel<Prior, Par>::sampleBeta(Size, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::vector<double>&, const ir::NormalInvGammaProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>; Par = ir::DynamicCoxPar; Size = long unsigned int]’:
DynamicCoxModel.h:136:23: required from ‘void ir::DynamicCoxModel<Prior>::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>]’
136 | this->sampleBeta(j, dNMat, YMat, par.lambda, par.jump, omega,
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
137 | prior.coef_prior, par.beta, par.nu);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >; Prior_type = ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>; Size = long unsigned int]’
94 | pm_->gibbsKernel(prior, par);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
bayesCox.cpp:262:18: required from here
262 | gs.runGibbs(prior, static_cast<bool>(p_verbose[0]), p_nReport[0]);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DynamicModel.h:452:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
452 | int err;
| ^~~
DynamicModel.h: In instantiation of ‘void ir::DynamicModel<Prior, Par>::sampleBeta(Size, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::vector<double>&, const ir::NormalProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>; Par = ir::DynamicCoxPar; Size = long unsigned int]’:
DynamicCoxModel.h:136:23: required from ‘void ir::DynamicCoxModel<Prior>::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>]’
136 | this->sampleBeta(j, dNMat, YMat, par.lambda, par.jump, omega,
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
137 | prior.coef_prior, par.beta, par.nu);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior> >; Prior_type = ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>; Size = long unsigned int]’
94 | pm_->gibbsKernel(prior, par);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
bayesCox.cpp:297:18: required from here
297 | gs.runGibbs(prior, static_cast<bool>(p_verbose[0]), p_nReport[0]);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DynamicModel.h:355:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
355 | int err;
| ^~~
DynamicModel.h: In instantiation of ‘void ir::DynamicModel<Prior, Par>::sampleBeta(Size, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::vector<double>&, const ir::NormalInvGammaProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>; Par = ir::DynamicCoxPar; Size = long unsigned int]’:
DynamicCoxModel.h:136:23: required from ‘void ir::DynamicCoxModel<Prior>::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>]’
136 | this->sampleBeta(j, dNMat, YMat, par.lambda, par.jump, omega,
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
137 | prior.coef_prior, par.beta, par.nu);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior> >; Prior_type = ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>; Size = long unsigned int]’
94 | pm_->gibbsKernel(prior, par);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
bayesCox.cpp:329:18: required from here
329 | gs.runGibbs(prior, static_cast<bool>(p_verbose[0]), p_nReport[0]);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DynamicModel.h:452:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
452 | int err;
| ^~~
DynamicModel.h: In instantiation of ‘void ir::DynamicModel<Prior, Par>::sampleBeta(Size, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::vector<double>&, const ir::NormalProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>; Par = ir::DynamicCoxPar; Size = long unsigned int]’:
DynamicCoxModel.h:136:23: required from ‘void ir::DynamicCoxModel<Prior>::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>]’
136 | this->sampleBeta(j, dNMat, YMat, par.lambda, par.jump, omega,
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
137 | prior.coef_prior, par.beta, par.nu);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >; Prior_type = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>; Size = long unsigned int]’
94 | pm_->gibbsKernel(prior, par);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
bayesCox.cpp:364:18: required from here
364 | gs.runGibbs(prior, static_cast<bool>(p_verbose[0]), p_nReport[0]);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DynamicModel.h:355:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
355 | int err;
| ^~~
DynamicModel.h: In instantiation of ‘void ir::DynamicModel<Prior, Par>::sampleBeta(Size, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::matrix<double>&, const boost::numeric::ublas::vector<double>&, const boost::numeric::ublas::matrix<int>&, const boost::numeric::ublas::vector<double>&, const ir::NormalInvGammaProcessPrior&, boost::numeric::ublas::matrix<double>&, boost::numeric::ublas::vector<double>&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>; Par = ir::DynamicCoxPar; Size = long unsigned int]’:
DynamicCoxModel.h:136:23: required from ‘void ir::DynamicCoxModel<Prior>::gibbsKernel(const Prior&, ir::DynamicCoxPar&) [with Prior = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>]’
136 | this->sampleBeta(j, dNMat, YMat, par.lambda, par.jump, omega,
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
137 | prior.coef_prior, par.beta, par.nu);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GibbsSampler.h:94:21: required from ‘void ir::GibbsSampler<M>::runGibbs(const Prior_type&, bool, Size) [with M = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >; Prior_type = ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>; Size = long unsigned int]’
94 | pm_->gibbsKernel(prior, par);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
bayesCox.cpp:397:18: required from here
397 | gs.runGibbs(prior, static_cast<bool>(p_verbose[0]), p_nReport[0]);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DynamicModel.h:452:11: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
452 | int err;
| ^~~
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from IntRegModel.h:18,
from TimeIndepModel.h:15:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior> >]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior> >]’
150 | boost::checked_delete( p );
| ~~~~~~~~~~~~~~~~~~~~~^~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior> >; Y = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior> >]’
205 | boost::detail::shared_count( p ).swap( pn );
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:44: required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior> >; T = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior> >]’
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
bayesCox.cpp:48:40: required from here
48 | boost::shared_ptr<M> pm(new M(pd));
| ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
44 | delete x;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior> >]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior> >]’
150 | boost::checked_delete( p );
| ~~~~~~~~~~~~~~~~~~~~~^~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior> >; Y = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior> >]’
205 | boost::detail::shared_count( p ).swap( pn );
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:44: required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior> >; T = ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior> >]’
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
bayesCox.cpp:76:40: required from here
76 | boost::shared_ptr<M> pm(new M(pd));
| ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
44 | delete x;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >]’
150 | boost::checked_delete( p );
| ~~~~~~~~~~~~~~~~~~~~~^~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >; Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >]’
205 | boost::detail::shared_count( p ).swap( pn );
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:44: required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >; T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >]’
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
bayesCox.cpp:104:40: required from here
104 | boost::shared_ptr<M> pm(new M(pd));
| ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
44 | delete x;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >]’
150 | boost::checked_delete( p );
| ~~~~~~~~~~~~~~~~~~~~~^~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >; Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >]’
205 | boost::detail::shared_count( p ).swap( pn );
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:44: required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >; T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >]’
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
bayesCox.cpp:133:40: required from here
133 | boost::shared_ptr<M> pm(new M(pd));
| ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
44 | delete x;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >]’
150 | boost::checked_delete( p );
| ~~~~~~~~~~~~~~~~~~~~~^~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >; Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >]’
205 | boost::detail::shared_count( p ).swap( pn );
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:44: required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >; T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >]’
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
bayesCox.cpp:164:40: required from here
164 | boost::shared_ptr<M> pm(new M(pd));
| ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
44 | delete x;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >]’
150 | boost::checked_delete( p );
| ~~~~~~~~~~~~~~~~~~~~~^~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >; Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >]’
205 | boost::detail::shared_count( p ).swap( pn );
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:44: required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >; T = ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >]’
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
bayesCox.cpp:193:40: required from here
193 | boost::shared_ptr<M> pm(new M(pd));
| ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
44 | delete x;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >]’
150 | boost::checked_delete( p );
| ~~~~~~~~~~~~~~~~~~~~~^~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >; Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >]’
205 | boost::detail::shared_count( p ).swap( pn );
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:44: required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >; T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >]’
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
bayesCox.cpp:224:40: required from here
224 | boost::shared_ptr<M> pm(new M(pd));
| ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
44 | delete x;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >]’
150 | boost::checked_delete( p );
| ~~~~~~~~~~~~~~~~~~~~~^~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >; Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >]’
205 | boost::detail::shared_count( p ).swap( pn );
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:44: required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >; T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >]’
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
bayesCox.cpp:257:40: required from here
257 | boost::shared_ptr<M> pm(new M(pd));
| ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
44 | delete x;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior> >]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior> >]’
150 | boost::checked_delete( p );
| ~~~~~~~~~~~~~~~~~~~~~^~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior> >; Y = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior> >]’
205 | boost::detail::shared_count( p ).swap( pn );
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:44: required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior> >; T = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior> >]’
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
bayesCox.cpp:292:40: required from here
292 | boost::shared_ptr<M> pm(new M(pd));
| ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
44 | delete x;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior> >]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior> >]’
150 | boost::checked_delete( p );
| ~~~~~~~~~~~~~~~~~~~~~^~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior> >; Y = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior> >]’
205 | boost::detail::shared_count( p ).swap( pn );
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:44: required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior> >; T = ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior> >]’
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
bayesCox.cpp:324:40: required from here
324 | boost::shared_ptr<M> pm(new M(pd));
| ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
44 | delete x;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >]’
150 | boost::checked_delete( p );
| ~~~~~~~~~~~~~~~~~~~~~^~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >; Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >]’
205 | boost::detail::shared_count( p ).swap( pn );
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:44: required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >; T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >]’
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
bayesCox.cpp:359:40: required from here
359 | boost::shared_ptr<M> pm(new M(pd));
| ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
44 | delete x;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp: In instantiation of ‘void boost::checked_delete(T*) [with T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:34: required from ‘boost::detail::shared_count::shared_count(Y*) [with Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >]’
150 | boost::checked_delete( p );
| ~~~~~~~~~~~~~~~~~~~~~^~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:20: required from ‘void boost::detail::sp_pointer_construct(boost::shared_ptr<X>*, Y*, shared_count&) [with T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >; Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >]’
205 | boost::detail::shared_count( p ).swap( pn );
| ^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:44: required from ‘boost::shared_ptr<T>::shared_ptr(Y*) [with Y = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >; T = ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >]’
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
bayesCox.cpp:392:40: required from here
392 | boost::shared_ptr<M> pm(new M(pd));
| ^
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: deleting object of polymorphic class type ‘ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior> >’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
44 | delete x;
| ^~~~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dynsurv_init.c -o dynsurv_init.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o dynsurv.so IntRegPar.o arms.o bayesCox.o dynsurv_init.o -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiBL6EW/R.INSTALL3988514b0cf89/dynsurv/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiBL6EW/R.INSTALL3988514b0cf89/dynsurv/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiBL6EW/R.INSTALL3988514b0cf89/dynsurv/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-dynsurv/00new/dynsurv/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dynsurv)