* using log directory ‘/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dTBM.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-16) 14.2.0
    GNU Fortran (Debian 14.2.0-16) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘dTBM/DESCRIPTION’ ... OK
* this is package ‘dTBM’ version ‘3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘dTBM’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-release-linux-x86_64/dTBM-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s/18s] OK
* checking Rd files ... [0s/1s] NOTE
checkRd: (-1) angle_iteration.Rd:23: Lost braces; missing escapes or markup?
    23 | \code{z} {a list of vectors recording the estimated clustering assignment}
       |          ^
checkRd: (-1) angle_iteration.Rd:25: Lost braces; missing escapes or markup?
    25 | \code{s_deg} {logic variable, if "TRUE", degenerate estimated core tensor/matrix occurs during the iteration; if "FALSE", otherwise}
       |              ^
checkRd: (-1) dtbm.Rd:23: Lost braces
    23 | \code{z} {a list of vectors recording the refined clustering assignment with initialization \code{z0}}
       |          ^
checkRd: (-1) dtbm.Rd:25: Lost braces; missing escapes or markup?
    25 | \code{s_deg} {logic variable, if "TRUE", degenerate estimated core tensor/matrix occurs during the iteration; if "FALSE", otherwise}
       |              ^
checkRd: (-1) dtbm.Rd:27: Lost braces; missing escapes or markup?
    27 | \code{z0} { a list of vectors recording the initial clustering assignment }
       |           ^
checkRd: (-1) dtbm.Rd:29: Lost braces; missing escapes or markup?
    29 | \code{s0} { a list of vectors recording the index of degenerate entities with random clustering assignment in initialization}
       |           ^
checkRd: (-1) select_r.Rd:19: Lost braces; missing escapes or markup?
    19 | \code{r} {vector, the cluster number among the candidates with minimal BIC value}
       |          ^
checkRd: (-1) select_r.Rd:21: Lost braces; missing escapes or markup?
    21 | \code{bic} {vector, the BIC value for each candidiate}
       |            ^
checkRd: (-1) sim_dTBM.Rd:56: Lost braces
    56 | \code{Y} {array ( if \code{imat = FALSE} )/matrix ( if \code{imat = TRUE} ), simulated tensor/matrix observations with dimension \code{p}  }
       |          ^
checkRd: (-1) sim_dTBM.Rd:58: Lost braces
    58 | \code{X} {array ( if \code{imat = FALSE} )/matrix ( if \code{imat = TRUE} ), mean tensor/matrix of the observation, i.e., the expectation of \code{Y}}
       |          ^
checkRd: (-1) sim_dTBM.Rd:60: Lost braces
    60 | \code{S} {array ( if \code{imat = FALSE} )/matrix ( if \code{imat = TRUE} ), core tensor/matrix recording the block effects with dimension \code{r}}
       |          ^
checkRd: (-1) sim_dTBM.Rd:62: Lost braces; missing escapes or markup?
    62 | \code{theta} {a list of vectors, degree heterogeneity on each mode}
       |              ^
checkRd: (-1) sim_dTBM.Rd:64: Lost braces; missing escapes or markup?
    64 | \code{z} {a list of vectors, clustering assignment on each mode}
       |          ^
checkRd: (-1) wkmeans.Rd:19: Lost braces; missing escapes or markup?
    19 | \code{z0} { a list of vectors recording the estimated clustering assignment }
       |           ^
checkRd: (-1) wkmeans.Rd:21: Lost braces; missing escapes or markup?
    21 | \code{s0} { a list of vectors recording the index of degenerate entities with random clustering assignment}
       |           ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [6s/8s] OK
* checking PDF version of manual ... [4s/6s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 NOTE