* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘curveDepth’ ...
** package ‘curveDepth’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpvs8ZGE/R.INSTALL2534d92fbf9e7e/curveDepth/src'
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c depthsCurveHfsp.cpp -o depthsCurveHfsp.o
depthsCurveHfsp.cpp: In function ‘Rcpp::NumericMatrix distImages(arma::cube, int)’:
depthsCurveHfsp.cpp:104:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
104 | for (int i = 0; i < images.n_slices; i++){
| ~~^~~~~~~~~~~~~~~~~
depthsCurveHfsp.cpp:117:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
117 | for (int i = 0; i < images.n_slices - 1; i++){
| ~~^~~~~~~~~~~~~~~~~~~~~
depthsCurveHfsp.cpp:121:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
121 | for (int j = i + 1; j < images.n_slices; j++){
| ~~^~~~~~~~~~~~~~~~~
depthsCurveHfsp.cpp: In function ‘Rcpp::List images2curves(arma::cube)’:
depthsCurveHfsp.cpp:1012:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1012 | for (int i = 0; i < images.n_slices; i++){
| ~~^~~~~~~~~~~~~~~~~
In file included from routines.h:16,
from stdafx.h:21,
from depthsCurveHfsp.cpp:25:
hypermatrix.h: In instantiation of ‘int hypermatrix<BlockType>::clear() [with BlockType = double]’:
hypermatrix.h:155:14: required from ‘typeHypermatrix<UnitType>::typeHypermatrix(int, int*) [with UnitType = double]’
155 | this->clear();
| ~~~~~~~~~~~^~
routines.h:202:73: required from here
202 | ImageDensity(int d, int* ns) : typeHypermatrix<double>(d, ns), Curve(d) {
| ^
hypermatrix.h:42:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
42 | for (int i = 0; i < size; i++){
| ~~^~~~~~
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c routines.cpp -o routines.o
routines.cpp: In function ‘int generateDirections(int, int, int, double**)’:
routines.cpp:68:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
68 | for (unsigned int i = 0; i < nDirs; i++){
| ~~^~~~~~~
routines.cpp:70:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
70 | for (unsigned int j = 0; j < d; j++){
| ~~^~~
routines.cpp:76:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
76 | for (unsigned int j = 0; j < d; j++){
| ~~^~~
In file included from routines.h:16,
from stdafx.h:21,
from routines.cpp:16:
hypermatrix.h: In instantiation of ‘UnitType typeHypermatrix<UnitType>::getNNonzero() [with UnitType = double]’:
routines.cpp:494:28: required from here
494 | int nPixels = getNNonzero();
| ~~~~~~~~~~~^~
hypermatrix.h:204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
204 | for (int i = 0; i < this->size; i++){
| ~~^~~~~~~~~~~~
hypermatrix.h: In instantiation of ‘int typeHypermatrix<UnitType>::add(typeHypermatrix<UnitType>&) [with UnitType = double]’:
routines.cpp:1244:19: required from here
1244 | genPattern.add(imageDensities[i]);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
hypermatrix.h:163:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
163 | for (int i = 0; i < this->size; i++){
| ~~^~~~~~~~~~~~
hypermatrix.h: In instantiation of ‘int typeHypermatrix<UnitType>::standardize() [with UnitType = double]’:
routines.cpp:1246:25: required from here
1246 | genPattern.standardize();
| ~~~~~~~~~~~~~~~~~~~~~~^~
hypermatrix.h:186:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
186 | for (int i = 0; i < this->size; i++){
| ~~^~~~~~~~~~~~
hypermatrix.h: In instantiation of ‘UnitType typeHypermatrix<UnitType>::getTotal() [with UnitType = double]’:
routines.cpp:1247:31: required from here
1247 | Rcout << genPattern.getTotal() << " ";
| ~~~~~~~~~~~~~~~~~~~^~
hypermatrix.h:195:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
195 | for (int i = 0; i < this->size; i++){
| ~~^~~~~~~~~~~~
hypermatrix.h: In instantiation of ‘int hypermatrix<BlockType>::clear() [with BlockType = double]’:
hypermatrix.h:155:14: required from ‘typeHypermatrix<UnitType>::typeHypermatrix(int, int*) [with UnitType = double]’
155 | this->clear();
| ~~~~~~~~~~~^~
routines.h:202:73: required from here
202 | ImageDensity(int d, int* ns) : typeHypermatrix<double>(d, ns), Curve(d) {
| ^
hypermatrix.h:42:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
42 | for (int i = 0; i < size; i++){
| ~~^~~~~~
hypermatrix.h: In instantiation of ‘int hypermatrix<BlockType>::clear() [with BlockType = long long unsigned int]’:
hypermatrix.h:68:33: required from ‘void binaryHypermatrix<BlockType>::clear() [with BlockType = long long unsigned int]’
68 | hypermatrix<BlockType>::clear();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
routines.cpp:493:17: required from here
493 | binImage.clear();
| ~~~~~~~~~~~~~~^~
hypermatrix.h:42:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
42 | for (int i = 0; i < size; i++){
| ~~^~~~~~
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c voxelize.cpp -o voxelize.o
In file included from routines.h:16,
from stdafx.h:21,
from voxelize.cpp:13:
hypermatrix.h: In instantiation of ‘int hypermatrix<BlockType>::clear() [with BlockType = double]’:
hypermatrix.h:155:14: required from ‘typeHypermatrix<UnitType>::typeHypermatrix(int, int*) [with UnitType = double]’
155 | this->clear();
| ~~~~~~~~~~~^~
routines.h:202:73: required from here
202 | ImageDensity(int d, int* ns) : typeHypermatrix<double>(d, ns), Curve(d) {
| ^
hypermatrix.h:42:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
42 | for (int i = 0; i < size; i++){
| ~~^~~~~~
hypermatrix.h: In instantiation of ‘int hypermatrix<BlockType>::clear() [with BlockType = long long unsigned int]’:
hypermatrix.h:68:33: required from ‘void binaryHypermatrix<BlockType>::clear() [with BlockType = long long unsigned int]’
68 | hypermatrix<BlockType>::clear();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
hypermatrix.h:85:8: required from ‘binaryHypermatrix<BlockType>::binaryHypermatrix(int, int*) [with BlockType = long long unsigned int]’
85 | this->clear();
| ~~~~~~^~~~~
voxelize.cpp:101:70: required from here
101 | binaryHypermatrix<unsigned long long> checkVoxels(nFcns, nDiscretes);
| ^
hypermatrix.h:42:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
42 | for (int i = 0; i < size; i++){
| ~~^~~~~~
g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o curveDepth.so RcppExports.o depthsCurveHfsp.o routines.o voxelize.o -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpvs8ZGE/R.INSTALL2534d92fbf9e7e/curveDepth/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpvs8ZGE/R.INSTALL2534d92fbf9e7e/curveDepth/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpvs8ZGE/R.INSTALL2534d92fbf9e7e/curveDepth/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-curveDepth/00new/curveDepth/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (curveDepth)