• using R version 4.4.3 (2025-02-28)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-19) 14.2.0     GNU Fortran (Debian 14.2.0-19) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘bioRad/DESCRIPTION’ ... OK
• this is package ‘bioRad’ version ‘0.9.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘bioRad’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [24s/28s] OK
• checking Rd files ... [1s/2s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [46s/63s] OK Examples with CPU (user + system) or elapsed time > 5s                 user system elapsed plot.scan 8.544 0.187 11.109 write_pvolfile 4.908 0.062 6.625
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [159s/233s] OK   Running ‘testthat.R’ [159s/232s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [68s/99s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘bioRad.Rmd’ using rmarkdown --- finished re-building ‘bioRad.Rmd’ --- re-building ‘rad_aero_22.Rmd’ using rmarkdown --- finished re-building ‘rad_aero_22.Rmd’ --- re-building ‘range_correction.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/bioRad.Rcheck/vign_test/bioRad/vignettes/range_correction_files/figure-html/unnamed-chunk-2-1.png 288x288 pixels, 8 bits/pixel, 253 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5088 bytes Input file size = 5937 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4605   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4561   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4561 Output IDAT size = 4561 bytes (527 bytes decrease) Output file size = 4639 bytes (1298 bytes = 21.86% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/bioRad.Rcheck/vign_test/bioRad/vignettes/range_correction_files/figure-html/unnamed-chunk-3-1.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5219 bytes Input file size = 6074 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4672   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4621   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4621 Output IDAT size = 4621 bytes (598 bytes decrease) Output file size = 4699 bytes (1375 bytes = 22.64% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/bioRad.Rcheck/vign_test/bioRad/vignettes/range_correction_files/figure-html/unnamed-chunk-4-1.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6187 bytes Input file size = 7042 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5698   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5698 Output IDAT size = 5698 bytes (489 bytes decrease) Output file size = 5776 bytes (1266 bytes = 17.98% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/bioRad.Rcheck/vign_test/bioRad/vignettes/range_correction_files/figure-html/unnamed-chunk-4-2.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6234 bytes Input file size = 7092 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5664   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5664 Output IDAT size = 5664 bytes (570 bytes decrease) Output file size = 5742 bytes (1350 bytes = 19.04% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/bioRad.Rcheck/vign_test/bioRad/vignettes/range_correction_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6379 bytes Input file size = 7237 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5814   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5814 Output IDAT size = 5814 bytes (565 bytes decrease) Output file size = 5892 bytes (1345 bytes = 18.59% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/bioRad.Rcheck/vign_test/bioRad/vignettes/range_correction_files/figure-html/unnamed-chunk-7-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12373 bytes Input file size = 12463 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10101   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10101 Output IDAT size = 10101 bytes (2272 bytes decrease) Output file size = 10179 bytes (2284 bytes = 18.33% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/bioRad.Rcheck/vign_test/bioRad/vignettes/range_correction_files/figure-html/unnamed-chunk-9-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26429 bytes Input file size = 26543 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15760   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15760 Output IDAT size = 15760 bytes (10669 bytes decrease) Output file size = 15838 bytes (10705 bytes = 40.33% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/bioRad.Rcheck/vign_test/bioRad/vignettes/range_correction_files/figure-html/unnamed-chunk-11-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36792 bytes Input file size = 36918 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27195   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27195 Output IDAT size = 27195 bytes (9597 bytes decrease) Output file size = 27273 bytes (9645 bytes = 26.13% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/bioRad.Rcheck/vign_test/bioRad/vignettes/range_correction_files/figure-html/unnamed-chunk-12-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28130 bytes Input file size = 28244 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21152   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21152 Output IDAT size = 21152 bytes (6978 bytes decrease) Output file size = 21230 bytes (7014 bytes = 24.83% decrease) Quitting from range_correction.Rmd:147-152 [unnamed-chunk-13] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'range_correction.Rmd' failed with diagnostics: Problem while converting geom to grob. ℹ Error occurred in the 1st layer. Caused by error in `check.dimensions()`: ! Zero tiles were loaded for type osm --- failed re-building ‘range_correction.Rmd’ SUMMARY: processing the following file failed:   ‘range_correction.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [9s/11s] OK
• checking HTML version of manual ... [5s/8s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR