• using R version 4.4.2 (2024-10-31)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-6) 14.2.0     GNU Fortran (Debian 14.2.0-6) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘bcfrailph/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘bcfrailph’ version ‘0.1.1’
• package encoding: UTF-8
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• checking whether package ‘bcfrailph’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
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• checking R code for possible problems ... [29s/34s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) bcfrailph.Rd:35: Lost braces; missing escapes or markup?     35 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.}        | ^ checkRd: (-1) bcfrailph.Rd:36: Lost braces; missing escapes or markup?     36 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.}        | ^ checkRd: (-1) bcfrailph.Rd:37: Lost braces; missing escapes or markup?     37 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameters.}        | ^ checkRd: (-1) bcfrailph.Rd:42: Lost braces; missing escapes or markup?     42 | \item \code{X}-{Matrix of observed covariates.}        | ^ checkRd: (-1) bcfrailph.Rd:43: Lost braces; missing escapes or markup?     43 | \item \code{time}-{the observed survival time.}        | ^ checkRd: (-1) bcfrailph.Rd:44: Lost braces; missing escapes or markup?     44 | \item \code{censor}-{censoring indicator.}        | ^ checkRd: (-1) bcfrailph.Rd:45: Lost braces; missing escapes or markup?     45 | \item \code{resid}-{the martingale residuals.}        | ^ checkRd: (-1) bcfrailph.Rd:46: Lost braces; missing escapes or markup?     46 | \item \code{lin.prid}-{the vector of linear predictors.}        | ^ checkRd: (-1) bcfrailph.Rd:47: Lost braces; missing escapes or markup?     47 | \item \code{frail}-{estimated Frailty values.}        | ^ checkRd: (-1) bcfrailph.Rd:48: Lost braces; missing escapes or markup?     48 | \item \code{iteration}-{Number of outer iterations.}        | ^ checkRd: (-1) bcfrailph.Rd:49: Lost braces; missing escapes or markup?     49 | \item \code{e.time}-{the vector of unique event times.}        | ^ checkRd: (-1) bcfrailph.Rd:50: Lost braces; missing escapes or markup?     50 | \item \code{n.event}- {the number of events at each of the unique event times.}        | ^ checkRd: (-1) bcfrailph.Rd:51: Lost braces; missing escapes or markup?     51 | \item \code{convergence}-{an indicator, 1 if converge and 0 otherwise.}        | ^ checkRd: (-1) bcfrailph.Rd:52: Lost braces; missing escapes or markup?     52 | \item \code{history}-{an array containing records of estimates and other information on each iterations.}        | ^ checkRd: (-1) fitbccv.gammasp.Rd:32: Lost braces; missing escapes or markup?     32 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.}        | ^ checkRd: (-1) fitbccv.gammasp.Rd:33: Lost braces; missing escapes or markup?     33 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.}        | ^ checkRd: (-1) fitbccv.gammasp.Rd:34: Lost braces; missing escapes or markup?     34 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameters.}        | ^ checkRd: (-1) fitbccv.gammasp.Rd:39: Lost braces; missing escapes or markup?     39 | \item \code{X}-{Matrix of observed covariates.}        | ^ checkRd: (-1) fitbccv.gammasp.Rd:40: Lost braces; missing escapes or markup?     40 | \item \code{time}-{the observed survival time.}        | ^ checkRd: (-1) fitbccv.gammasp.Rd:41: Lost braces; missing escapes or markup?     41 | \item \code{censor}-{censoring indicator.}        | ^ checkRd: (-1) fitbccv.gammasp.Rd:42: Lost braces; missing escapes or markup?     42 | \item \code{resid}-{the martingale residuals.}        | ^ checkRd: (-1) fitbccv.gammasp.Rd:43: Lost braces; missing escapes or markup?     43 | \item \code{lin.prid}-{the vector of linear predictors.}        | ^ checkRd: (-1) fitbccv.gammasp.Rd:44: Lost braces; missing escapes or markup?     44 | \item \code{frail}-{estimated Frailty values.}        | ^ checkRd: (-1) fitbccv.gammasp.Rd:45: Lost braces; missing escapes or markup?     45 | \item \code{iteration}-{Number of outer iterations.}        | ^ checkRd: (-1) fitbccv.gammasp.Rd:46: Lost braces; missing escapes or markup?     46 | \item \code{e.time}-{the vector of unique event times.}        | ^ checkRd: (-1) fitbccv.gammasp.Rd:47: Lost braces; missing escapes or markup?     47 | \item \code{n.event}- {the number of events at each of the unique event times.}        | ^ checkRd: (-1) fitbccv.gammasp.Rd:48: Lost braces; missing escapes or markup?     48 | \item \code{convergence}-{an indicator, 1 if converge and 0 otherwise.}        | ^ checkRd: (-1) fitbccv.gammasp.Rd:49: Lost braces; missing escapes or markup?     49 | \item \code{history}-{an array containing records of estimates and other information on each iterations.}        | ^ checkRd: (-1) fitbccv.lognsp.Rd:21: Lost braces; missing escapes or markup?     21 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.}        | ^ checkRd: (-1) fitbccv.lognsp.Rd:22: Lost braces; missing escapes or markup?     22 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.}        | ^ checkRd: (-1) fitbccv.lognsp.Rd:23: Lost braces; missing escapes or markup?     23 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameters.}        | ^ checkRd: (-1) fitbccv.lognsp.Rd:28: Lost braces; missing escapes or markup?     28 | \item \code{X}-{Matrix of observed covariates.}        | ^ checkRd: (-1) fitbccv.lognsp.Rd:29: Lost braces; missing escapes or markup?     29 | \item \code{time}-{the observed survival time.}        | ^ checkRd: (-1) fitbccv.lognsp.Rd:30: Lost braces; missing escapes or markup?     30 | \item \code{censor}-{censoring indicator.}        | ^ checkRd: (-1) fitbccv.lognsp.Rd:31: Lost braces; missing escapes or markup?     31 | \item \code{resid}-{the martingale residuals.}        | ^ checkRd: (-1) fitbccv.lognsp.Rd:32: Lost braces; missing escapes or markup?     32 | \item \code{lin.prid}-{the vector of linear predictors.}        | ^ checkRd: (-1) fitbccv.lognsp.Rd:33: Lost braces; missing escapes or markup?     33 | \item \code{frail}-{estimated Frailty values.}        | ^ checkRd: (-1) fitbccv.lognsp.Rd:34: Lost braces; missing escapes or markup?     34 | \item \code{iteration}-{Number of outer iterations.}        | ^ checkRd: (-1) fitbccv.lognsp.Rd:35: Lost braces; missing escapes or markup?     35 | \item \code{e.time}-{the vector of unique event times.}        | ^ checkRd: (-1) fitbccv.lognsp.Rd:36: Lost braces; missing escapes or markup?     36 | \item \code{n.event}- {the number of events at each of the unique event times.}        | ^ checkRd: (-1) fitbccv.lognsp.Rd:37: Lost braces; missing escapes or markup?     37 | \item \code{convergence}-{an indicator, 1 if converge and 0 otherwise.}        | ^ checkRd: (-1) fitbccv.lognsp.Rd:38: Lost braces; missing escapes or markup?     38 | \item \code{history}-{an array containing records of estimates and other information on each iterations.}        | ^ checkRd: (-1) shrgamsp.Rd:32: Lost braces; missing escapes or markup?     32 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.}        | ^ checkRd: (-1) shrgamsp.Rd:33: Lost braces; missing escapes or markup?     33 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.}        | ^ checkRd: (-1) shrgamsp.Rd:34: Lost braces; missing escapes or markup?     34 | \item \code{vcov}- {Variance Covariance matrix of the Estimated Covariate coefficients obtained from the observed information matrix.}        | ^ checkRd: (-1) shrgamsp.Rd:35: Lost braces; missing escapes or markup?     35 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameter.}        | ^ checkRd: (-1) shrgamsp.Rd:40: Lost braces; missing escapes or markup?     40 | \item \code{X}-{Matrix of observed covariates.}        | ^ checkRd: (-1) shrgamsp.Rd:41: Lost braces; missing escapes or markup?     41 | \item \code{time}-{the observed survival time.}        | ^ checkRd: (-1) shrgamsp.Rd:42: Lost braces; missing escapes or markup?     42 | \item \code{censor}-{censoring indicator.}        | ^ checkRd: (-1) shrgamsp.Rd:43: Lost braces; missing escapes or markup?     43 | \item \code{resid}-{the martingale residuals.}        | ^ checkRd: (-1) shrgamsp.Rd:44: Lost braces; missing escapes or markup?     44 | \item \code{lin.prid}-{the vector of linear predictors.}        | ^ checkRd: (-1) shrgamsp.Rd:45: Lost braces; missing escapes or markup?     45 | \item \code{frail}-{estimated Frailty values.}        | ^ checkRd: (-1) shrgamsp.Rd:46: Lost braces; missing escapes or markup?     46 | \item \code{iteration}-{Number of outer iterations.}        | ^ checkRd: (-1) shrgamsp.Rd:47: Lost braces; missing escapes or markup?     47 | \item \code{e.time}-{the vector of unique event times.}        | ^ checkRd: (-1) shrgamsp.Rd:48: Lost braces; missing escapes or markup?     48 | \item \code{n.event}- {the number of events at each of the unique event times.}        | ^ checkRd: (-1) shrgamsp.Rd:49: Lost braces     49 | \item \code{convergence}-{an indicator of convergence . see \code{\link{nlminb}}.}        | ^ checkRd: (-1) simbcfrailph.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simbcfrailph.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simbcfrailph.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simbcfrailph.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simbcfrailph.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simbcfrailph.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simbcfrailph.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simstdybcf.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simstdybcf.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simstdybcf.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simstdybcf.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simstdybcf.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simstdybcf.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simstdybcf.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
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• checking examples ... [23s/27s] OK Examples with CPU (user + system) or elapsed time > 5s           user system elapsed shrgamsp 5.413 0.004 6.147
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• DONE

Status: 1 NOTE