- using R version 4.4.2 (2024-10-31)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-6) 14.2.0
GNU Fortran (Debian 14.2.0-6) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘R0/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘R0’ version ‘1.3-1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘R0’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [9s/12s] OK
- checking Rd files ... [1s/1s] NOTE
checkRd: (-1) est.R0.ML.Rd:98: Lost braces
98 | Supplementary Material S1 from \doi{10.1186/1472-6947-12-147}{Obadia et al., 2012}.
| ^
checkRd: (-1) plot.R0.R.Rd:20: Lost braces
20 | Called for side effect. Draws all \eqn{R_{0}} or /eqn{R(t)} values from one estimation method.
| ^
checkRd: (-1) plot.R0.sR.Rd:20: Lost braces
20 | Called for side effect. Draws all \eqn{R_{0}} or /eqn{R(t)} values from an
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [6s/6s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [10s/13s] OK
Running ‘check.incid.R’ [0s/0s]
Running ‘est.GT.R’ [0s/0s]
Running ‘est.R0.AR.R’ [0s/1s]
Running ‘est.R0.EG.R’ [0s/1s]
Running ‘est.R0.ML.R’ [0s/1s]
Running ‘est.R0.SB.R’ [1s/1s]
Running ‘est.R0.TD.R’ [1s/1s]
Running ‘estimate.R.R’ [1s/1s]
Running ‘generation.time.R’ [0s/1s]
Running ‘sensitivity.analysis.R’ [5s/6s]
Running ‘sim.epid.R’ [0s/0s]
Running ‘smooth.Rt.R’ [0s/1s]
- checking PDF version of manual ... [8s/10s] OK
- checking HTML version of manual ... [2s/4s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE