- using R version 4.4.3 (2025-02-28)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-16) 14.2.0
GNU Fortran (Debian 14.2.0-16) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘NHSRdatasets/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘NHSRdatasets’ version ‘0.3.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘NHSRdatasets’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [2s/4s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [2s/3s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [41s/50s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘LOS_model.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/NHSRdatasets.Rcheck/vign_test/NHSRdatasets/vignettes/LOS_model_files/figure-html/VisageLOS-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13935 bytes
Input file size = 14025 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10982
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10982
Output IDAT size = 10982 bytes (2953 bytes decrease)
Output file size = 11060 bytes (2965 bytes = 21.14% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/NHSRdatasets.Rcheck/vign_test/NHSRdatasets/vignettes/LOS_model_files/figure-html/VisageLOS-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12911 bytes
Input file size = 13001 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9836
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9836
Output IDAT size = 9836 bytes (3075 bytes decrease)
Output file size = 9914 bytes (3087 bytes = 23.74% decrease)
--- finished re-building ‘LOS_model.Rmd’
--- re-building ‘ae_attendances.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/NHSRdatasets.Rcheck/vign_test/NHSRdatasets/vignettes/ae_attendances_files/figure-html/england performance plot-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13653 bytes
Input file size = 14523 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12539
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12539
Output IDAT size = 12539 bytes (1114 bytes decrease)
Output file size = 12617 bytes (1906 bytes = 13.12% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/NHSRdatasets.Rcheck/vign_test/NHSRdatasets/vignettes/ae_attendances_files/figure-html/england performance by type-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33399 bytes
Input file size = 33525 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24699
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24699
Output IDAT size = 24699 bytes (8700 bytes decrease)
Output file size = 24777 bytes (8748 bytes = 26.09% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/NHSRdatasets.Rcheck/vign_test/NHSRdatasets/vignettes/ae_attendances_files/figure-html/performance_by_trust top 5 bottom 5 plot-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 16349 bytes
Input file size = 17219 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15982
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15982
Output IDAT size = 15982 bytes (367 bytes decrease)
Output file size = 16060 bytes (1159 bytes = 6.73% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/NHSRdatasets.Rcheck/vign_test/NHSRdatasets/vignettes/ae_attendances_files/figure-html/bencmarking plot-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6587 bytes
Input file size = 7445 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5802
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5781
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5781
Output IDAT size = 5781 bytes (806 bytes decrease)
Output file size = 5859 bytes (1586 bytes = 21.30% decrease)
--- finished re-building ‘ae_attendances.Rmd’
--- re-building ‘ons_mortality.Rmd’ using rmarkdown
--- finished re-building ‘ons_mortality.Rmd’
--- re-building ‘stranded_model.Rmd’ using rmarkdown
--- finished re-building ‘stranded_model.Rmd’
--- re-building ‘synthetic_news_data.Rmd’ using rmarkdown
Quitting from lines 50-57 [observed_data_generation] (synthetic_news_data.Rmd)
Error: processing vignette 'synthetic_news_data.Rmd' failed with diagnostics:
cannot open the connection to 'https://raw.githubusercontent.com/StatsGary/SyntheticNEWSData/main/observed_news_data.csv'
--- failed re-building ‘synthetic_news_data.Rmd’
SUMMARY: processing the following file failed:
‘synthetic_news_data.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [4s/6s] OK
- checking HTML version of manual ... [0s/0s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR