- using R version 4.4.2 (2024-10-31)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-12) 14.2.0
GNU Fortran (Debian 14.2.0-12) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘MatchIt/DESCRIPTION’ ... OK
- this is package ‘MatchIt’ version ‘4.7.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘gurobi’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘MatchIt’ can be installed ... OK
See the install log for details.
- used C++ compiler: ‘g++-14 (Debian 14.2.0-12) 14.2.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
- checking whether the package can be unloaded cleanly ... [0s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking whether startup messages can be suppressed ... [0s/0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [23s/30s] OK
- checking Rd files ... [4s/5s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [15s/20s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
method_genetic 5.804 0.001 7.865
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [54s/71s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘MatchIt.Rmd’ using rmarkdown_notangle
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/MatchIt_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 22303 bytes
Input file size = 23185 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21278
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 21076
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 21076
Output IDAT size = 21076 bytes (1227 bytes decrease)
Output file size = 21154 bytes (2031 bytes = 8.76% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/MatchIt_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15009 bytes
Input file size = 15879 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13283
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13283
Output IDAT size = 13283 bytes (1726 bytes decrease)
Output file size = 13361 bytes (2518 bytes = 15.86% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/MatchIt_files/figure-html/unnamed-chunk-12-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11875 bytes
Input file size = 12745 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10969
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10917
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10917
Output IDAT size = 10917 bytes (958 bytes decrease)
Output file size = 10995 bytes (1750 bytes = 13.73% decrease)
--- finished re-building ‘MatchIt.Rmd’
--- re-building ‘assessing-balance.Rmd’ using rmarkdown_notangle
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-3-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 16116 bytes
Input file size = 16986 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15057
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 14959
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 14959
Output IDAT size = 14959 bytes (1157 bytes decrease)
Output file size = 15037 bytes (1949 bytes = 11.47% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-4-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 25424 bytes
Input file size = 26318 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23570
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23570
Output IDAT size = 23570 bytes (1854 bytes decrease)
Output file size = 23648 bytes (2670 bytes = 10.15% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11711 bytes
Input file size = 12581 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10316
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10316
Output IDAT size = 10316 bytes (1395 bytes decrease)
Output file size = 10394 bytes (2187 bytes = 17.38% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-6-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15764 bytes
Input file size = 16634 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14081
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14081
Output IDAT size = 14081 bytes (1683 bytes decrease)
Output file size = 14159 bytes (2475 bytes = 14.88% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-10-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 12085 bytes
Input file size = 12955 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11143
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11143
Output IDAT size = 11143 bytes (942 bytes decrease)
Output file size = 11221 bytes (1734 bytes = 13.38% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15048 bytes
Input file size = 15918 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13389
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13389
Output IDAT size = 13389 bytes (1659 bytes decrease)
Output file size = 13467 bytes (2451 bytes = 15.40% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-16-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21541 bytes
Input file size = 21643 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17992
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17992
Output IDAT size = 17992 bytes (3549 bytes decrease)
Output file size = 18070 bytes (3573 bytes = 16.51% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-17-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36003 bytes
Input file size = 36129 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29147
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29147
Output IDAT size = 29147 bytes (6856 bytes decrease)
Output file size = 29225 bytes (6904 bytes = 19.11% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-18-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42559 bytes
Input file size = 42697 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41098
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 39372
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 39372
Output IDAT size = 39372 bytes (3187 bytes decrease)
Output file size = 39450 bytes (3247 bytes = 7.60% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-18-2.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16255 bytes
Input file size = 16345 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14961
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 14609
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 14609
Output IDAT size = 14609 bytes (1646 bytes decrease)
Output file size = 14687 bytes (1658 bytes = 10.14% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-18-3.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20311 bytes
Input file size = 20413 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17425
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17425
Output IDAT size = 17425 bytes (2886 bytes decrease)
Output file size = 17503 bytes (2910 bytes = 14.26% decrease)
--- finished re-building ‘assessing-balance.Rmd’
--- re-building ‘estimating-effects.Rmd’ using rmarkdown_notangle
Quitting from lines 583-589 [unnamed-chunk-23] (estimating-effects.Rmd)
Error: processing vignette 'estimating-effects.Rmd' failed with diagnostics:
Assertion failed. One of the following must apply:
* checkmate::check_character(hypothesis): Must comply to pattern '='
* checkmate::check_numeric(hypothesis): Must be of type 'numeric', not 'character'
* checkmate::check_formula(hypothesis): Must be a formula, not character
* checkmate::check_matrix(hypothesis): Must be of type 'matrix', not 'character'
* checkmate::check_function(hypothesis): Must be a function, not 'character'
* checkmate::check_null(hypothesis): Must be NULL
--- failed re-building ‘estimating-effects.Rmd’
--- re-building ‘matching-methods.Rmd’ using rmarkdown_notangle
--- finished re-building ‘matching-methods.Rmd’
--- re-building ‘sampling-weights.Rmd’ using rmarkdown_notangle
--- finished re-building ‘sampling-weights.Rmd’
SUMMARY: processing the following file failed:
‘estimating-effects.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [12s/15s] OK
- checking HTML version of manual ... [7s/11s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR, 1 NOTE