• using R version 4.4.2 (2024-10-31)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘ImputeLongiCovs/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ImputeLongiCovs’ version ‘0.1.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘ImputeLongiCovs’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/7s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) analyses_data.Rd:19: Lost braces; missing escapes or markup?     19 | \item {patient_id}: {Unique identifier for each patient}        | ^ checkRd: (-1) analyses_data.Rd:20: Lost braces; missing escapes or markup?     20 | \item {tran_Year}: {numeric, starting from 1 up to the number of transitions}        | ^ checkRd: (-1) analyses_data.Rd:21: Lost braces; missing escapes or markup?     21 | \item {transition_year}: {text explanation of the transition}        | ^ checkRd: (-1) analyses_data.Rd:22: Lost braces; missing escapes or markup?     22 | \item {state_from}: {the state at the beginning of a transition}        | ^ checkRd: (-1) analyses_data.Rd:23: Lost braces; missing escapes or markup?     23 | \item {state_to}: {the state at the end of a transition}        | ^ checkRd: (-1) analyses_data.Rd:24: Lost braces; missing escapes or markup?     24 | \item {prob_matrix}: {the probability matrix that was generated by the initial data}        | ^ checkRd: (-1) analyses_data.Rd:25: Lost braces; missing escapes or markup?     25 | \item {cardio_state_from}: {cardiovascular disease at the beginning of the transition, binary, if 1 == Yes, else No}        | ^ checkRd: (-1) analyses_data.Rd:26: Lost braces; missing escapes or markup?     26 | \item {cardio_state_to}: {cardiovascular disease at the end of the transition, binary, if 1 == Yes, else No}        | ^ checkRd: (-1) analyses_data.Rd:27: Lost braces; missing escapes or markup?     27 | \item {flu_vaccination_state_from}: {flu vaccination at the end of the transition, binary, if 1 == Yes, else No}        | ^ checkRd: (-1) analyses_data.Rd:28: Lost braces; missing escapes or markup?     28 | \item {flu_vaccination_state_to}: {flu vaccination disease at the end of the transition, binary, if 1 == Yes, else No}        | ^ checkRd: (-1) initial_data.Rd:19: Lost braces; missing escapes or markup?     19 | \item {patient_id}: {Unique identifier for each patient}        | ^ checkRd: (-1) initial_data.Rd:20: Lost braces; missing escapes or markup?     20 | \item {tran_Year}: {numeric, starting from 1 up to the number of transitions}        | ^ checkRd: (-1) initial_data.Rd:21: Lost braces; missing escapes or markup?     21 | \item {transition_year}: {text explanation of the transition}        | ^ checkRd: (-1) initial_data.Rd:22: Lost braces; missing escapes or markup?     22 | \item {state_from}: {the state at the beginning of a transition}        | ^ checkRd: (-1) initial_data.Rd:23: Lost braces; missing escapes or markup?     23 | \item {state_to}: {the state at the end of a transition}        | ^ checkRd: (-1) initial_data.Rd:24: Lost braces; missing escapes or markup?     24 | \item {cardio_state_from}: {cardiovascular disease at the beginning of the transition, binary, if 1 == Yes, else No}        | ^ checkRd: (-1) initial_data.Rd:25: Lost braces; missing escapes or markup?     25 | \item {cardio_state_to}: {cardiovascular disease at the end of the transition, binary, if 1 == Yes, else No}        | ^ checkRd: (-1) initial_data.Rd:26: Lost braces; missing escapes or markup?     26 | \item {flu_vaccination_state_from}: {flu vaccination at the end of the transition, binary, if 1 == Yes, else No}        | ^ checkRd: (-1) initial_data.Rd:27: Lost braces; missing escapes or markup?     27 | \item {flu_vaccination_state_to}: {flu vaccination disease at the end of the transition, binary, if 1 == Yes, else No}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [12s/16s] OK Examples with CPU (user + system) or elapsed time > 5s                                user system elapsed impute_categorical_covariates 9.519 0.062 11.878
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [8s/10s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE