• using R version 4.5.2 (2025-10-31)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.3.0-10) 14.3.0     GNU Fortran (Debian 14.3.0-10) 14.3.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘GPCERF/DESCRIPTION’ ... OK
• this is package ‘GPCERF’ version ‘0.2.4’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘GPCERF’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
• checking C++ specification ... OK
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the package can be unloaded cleanly ... [3s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking whether startup messages can be suppressed ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [19s/24s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/4s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [85s/166s] ERROR   Running ‘testthat.R’ [85s/165s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(GPCERF)   >   > test_check("GPCERF")   2025-12-27 05:42:19.104377 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   Loading required package: nnls   Saving _problems/test-compute_deriv_nn-21.R   2025-12-27 05:42:25.979498 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_deriv_weights_gp-17.R   2025-12-27 05:42:31.96309 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_m_sigma-32.R   2025-12-27 05:42:40.992554 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-27 05:42:46.24367 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-27 05:42:52.037609 gimli2 832655 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=844849 on localhost:11984 at 05:42:52.401   2025-12-27 05:42:57.404636 gimli2 832655 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 5.367 s.   2025-12-27 05:42:57.478066 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-27 05:43:03.019006 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-27 05:43:09.436839 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_weight_gp-49.R   2025-12-27 05:43:15.234072 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-27 05:43:19.998547 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2025-12-27 05:43:24.004356 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-27 05:43:27.770642 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2025-12-27 05:43:27.803351 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-27 05:43:32.782964 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2025-12-27 05:43:32.822962 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2025-12-27 05:43:32.858173 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2025-12-27 05:43:32.894551 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2025-12-27 05:43:32.926379 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2025-12-27 05:43:32.956248 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2025-12-27 05:43:32.997803 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2025-12-27 05:43:33.035219 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-27 05:43:38.537569 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   starting worker pid=857200 on localhost:11984 at 05:43:38.888   starting worker pid=857201 on localhost:11984 at 05:43:38.983   2025-12-27 05:43:47.262992 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-27 05:43:52.127838 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2025-12-27 05:43:52.143196 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2025-12-27 05:43:52.152311 gimli2 832655 GPCERF find_optimal_nn INFO: Started finding optimal values ...   starting worker pid=861193 on localhost:11984 at 05:43:52.544   2025-12-27 05:43:57.366121 gimli2 832655 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.208 s.} ...   2025-12-27 05:43:57.368708 gimli2 832655 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=862605 on localhost:11984 at 05:43:57.766   2025-12-27 05:44:02.452229 gimli2 832655 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 5.083 s.   2025-12-27 05:44:02.460178 gimli2 832655 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...   starting worker pid=863635 on localhost:11984 at 05:44:02.818   2025-12-27 05:44:08.661345 gimli2 832655 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 6.20100000000001 s.   2025-12-27 05:44:08.663622 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 16.52 s.   2025-12-27 05:44:08.672938 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2025-12-27 05:44:08.681226 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2025-12-27 05:44:08.705635 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2025-12-27 05:44:08.719112 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2025-12-27 05:44:08.797773 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2025-12-27 05:44:08.811455 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2025-12-27 05:44:08.849041 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-27 05:44:12.414136 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2025-12-27 05:44:12.427572 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2025-12-27 05:44:12.460131 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2025-12-27 05:44:12.473627 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2025-12-27 05:44:12.545711 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-estimate_gps-15.R   2025-12-27 05:44:17.674585 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-27 05:44:22.394511 gimli2 832655 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=868365 on localhost:11984 at 05:44:22.770   2025-12-27 05:44:26.95224 gimli2 832655 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.55800000000002 s.   2025-12-27 05:44:26.954828 gimli2 832655 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...   starting worker pid=869330 on localhost:11984 at 05:44:27.490   2025-12-27 05:44:31.782852 gimli2 832655 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.828 s.   Saving _problems/test-estimate_mean_sd_nn-37.R   2025-12-27 05:44:31.846953 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-27 05:44:36.530302 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-27 05:44:42.545933 gimli2 832655 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=873507 on localhost:11984 at 05:44:42.939   2025-12-27 05:44:46.553329 gimli2 832655 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.00700000000001 s.   2025-12-27 05:44:46.583067 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-27 05:44:52.246751 gimli2 832655 GPCERF find_optimal_nn INFO: Started finding optimal values ...   starting worker pid=876621 on localhost:11984 at 05:44:52.683   2025-12-27 05:44:58.126549 gimli2 832655 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.87699999999998 s.} ...   [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──   Expected `deriv_val[1, 1]` to equal 1.558466.   Differences:     `actual`: -1.0   `expected`: 1.6      ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──   Expected `weights[37]` to equal 3.307249e-05.   Differences:     `actual`: -0.00011   `expected`: 0.00003      ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──   Expected `gp_cerf[10]` to equal 2.105425.   Differences:     `actual`: -6.1   `expected`: 2.1      ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────   Expected `weight$weight[28]` to equal 0.0002182767.   Differences:     `actual`: 0.00000   `expected`: 0.00022      ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────   Expected `gps_m$gps[4, 1]` to equal 8.74310154.   Differences:     `actual`: 7.3   `expected`: 8.7      ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──   Expected `val[10]` to equal 5.031225.   Differences:     `actual`: 5.067   `expected`: 5.031         [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [78s/156s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR