- using R version 4.4.2 (2024-10-31)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-12) 14.2.0
GNU Fortran (Debian 14.2.0-12) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘CalibrationCurves/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘CalibrationCurves’ version ‘2.0.3’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘CalibrationCurves’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/5s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
- checking whether the package can be unloaded cleanly ... [3s/4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
- checking loading without being on the library search path ... [4s/5s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [22s/27s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [10s/12s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [7s/9s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘CalibrationCurves.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/CalibrationCurves.Rcheck/vign_test/CalibrationCurves/vignettes/CalibrationCurves_files/figure-html/unnamed-chunk-6-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 90633 bytes
Input file size = 90843 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72130
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72130
Output IDAT size = 72130 bytes (18503 bytes decrease)
Output file size = 72208 bytes (18635 bytes = 20.51% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/CalibrationCurves.Rcheck/vign_test/CalibrationCurves/vignettes/CalibrationCurves_files/figure-html/unnamed-chunk-9-1.png
1344x960 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 24256 bytes
Input file size = 25138 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20465
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20465
Output IDAT size = 20465 bytes (3791 bytes decrease)
Output file size = 20543 bytes (4595 bytes = 18.28% decrease)
Quitting from lines 206-207 [unnamed-chunk-10] (CalibrationCurves.Rmd)
Error: processing vignette 'CalibrationCurves.Rmd' failed with diagnostics:
Nk = 3 led to estimation problems.
--- failed re-building ‘CalibrationCurves.Rmd’
SUMMARY: processing the following file failed:
‘CalibrationCurves.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [5s/7s] OK
- checking HTML version of manual ... [2s/2s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR