- using R version 4.4.2 (2024-10-31)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-8) 14.2.0
GNU Fortran (Debian 14.2.0-8) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘AntMAN/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘AntMAN’ version ‘1.1.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘AntMAN’ can be installed ... OK
See the install log for details.
- used C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
- checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
- checking loading without being on the library search path ... [1s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [10s/12s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking examples ... [12s/12s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
AM_find_gamma_Pois 5.288 0.068 5.491
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [247s/261s] OK
Running ‘UnitTest_AM_binder.R’ [3s/4s]
Running ‘UnitTest_AM_coclustering.R’ [6s/6s]
Running ‘UnitTest_AM_demo.R’ [12s/10s]
Running ‘UnitTest_AM_extract.R’ [17s/17s]
Running ‘UnitTest_AM_mcmc.R’ [7s/10s]
Running ‘UnitTest_AM_mix_components_prior.R’ [1s/2s]
Running ‘UnitTest_AM_mix_hyperparams.R’ [2s/2s]
Running ‘UnitTest_AM_mix_weights_prior.R’ [1s/1s]
Running ‘UnitTest_AM_plot.R’ [48s/56s]
Running ‘UnitTest_AM_prior.R’ [1s/2s]
Running ‘UnitTest_AM_sample.R’ [1s/2s]
Running ‘UnitTest_AntMANDatasets.R’ [2s/2s]
Running ‘UnitTest_AntMANPackage.R’ [1s/2s]
Running ‘UnitTest_INTERNAL_functions_antman_uninorm.R’ [1s/2s]
Running ‘UnitTest_INTERNAL_utilities.R’ [1s/2s]
Running ‘UseCaseCarcinoma.R’ [0s/0s]
Running ‘UseCaseGalaxy.R’ [0s/0s]
Running ‘UseCaseSegmentation.R’ [0s/0s]
Running ‘UseCaseWordCount.R’ [5s/6s]
Running ‘UserCaseIris.R’ [53s/51s]
Running ‘template.R’ [2s/2s]
Running ‘testBasicMultiBer.R’ [16s/17s]
Running ‘testBasicMultiNorm.R’ [0s/0s]
Running ‘testBasicUniNormNegBin.R’ [41s/38s]
Running ‘testBasicUniNormPois.R’ [7s/7s]
Running ‘testBasicUniPoisDirac.R’ [7s/9s]
Running ‘testBasicUniPoisGamma.R’ [9s/10s]
- checking PDF version of manual ... [6s/8s] OK
- checking HTML version of manual ... [2s/4s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE