* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘zoomerjoin’ ...
** package ‘zoomerjoin’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIgY0nl/R.INSTALL309f168e3c68/zoomerjoin/src'
rm -Rf zoomerjoin.so ./rust/target/release/libzoomerjoin.a entrypoint.o /home/hornik/tmp/scratch/RtmpIgY0nl/R.INSTALL309f168e3c68/zoomerjoin/src/.cargo /home/hornik/tmp/scratch/RtmpIgY0nl/R.INSTALL309f168e3c68/zoomerjoin/src/vendor
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c entrypoint.c -o entrypoint.o
if [ -f ./rust/vendor.tar.xz ]; then \
	tar xf rust/vendor.tar.xz && \
	mkdir -p /home/hornik/tmp/scratch/RtmpIgY0nl/R.INSTALL309f168e3c68/zoomerjoin/src/.cargo && \
	cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmpIgY0nl/R.INSTALL309f168e3c68/zoomerjoin/src/.cargo/config.toml; \
fi
# In some environments, ~/.cargo/bin might not be included in PATH, so we need
# to set it here to ensure cargo can be invoked. It is appended to PATH and
# therefore is only used if cargo is absent from the user's PATH.
if [ "" != "true" ]; then \
	export CARGO_HOME=/home/hornik/tmp/scratch/RtmpIgY0nl/R.INSTALL309f168e3c68/zoomerjoin/src/.cargo; \
fi && \
	export PATH="/home/hornik/bin:/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \
		echo `cargo --version` && echo `rustc --version` && \
		cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target;
cargo 1.82.0 (8f40fc59f 2024-08-21)
rustc 1.82.0 (f6e511eec 2024-10-15) (built from a source tarball)
   Compiling autocfg v1.1.0
   Compiling cfg-if v1.0.0
   Compiling libc v0.2.151
   Compiling memoffset v0.9.0
   Compiling libm v0.2.8
   Compiling scopeguard v1.2.0
   Compiling crossbeam-utils v0.8.16
   Compiling crossbeam-epoch v0.9.15
   Compiling num-traits v0.2.17
   Compiling rayon-core v1.12.0
   Compiling proc-macro2 v1.0.70
   Compiling crossbeam-deque v0.8.3
   Compiling getrandom v0.2.11
   Compiling matrixmultiply v0.3.8
   Compiling num-integer v0.1.45
   Compiling either v1.9.0
   Compiling unicode-ident v1.0.12
   Compiling rand_core v0.6.4
   Compiling rawpointer v0.2.1
   Compiling ppv-lite86 v0.2.17
   Compiling libR-sys v0.7.0
   Compiling rand_chacha v0.3.1
   Compiling rayon v1.8.0
   Compiling quote v1.0.33
   Compiling num-complex v0.4.4
   Compiling lock_api v0.4.11
   Compiling parking_lot_core v0.9.9
   Compiling paste v1.0.14
   Compiling ndarray v0.15.6
   Compiling syn v2.0.41
   Compiling rand v0.8.5
   Compiling once_cell v1.19.0
   Compiling smallvec v1.11.2
   Compiling extendr-api v0.7.0
   Compiling rand_distr v0.4.3
   Compiling extendr-macros v0.7.0
   Compiling hashbrown v0.14.3
   Compiling dashmap v5.5.3
   Compiling ndarray-rand v0.14.0
   Compiling itertools v0.10.5
   Compiling rustc-hash v1.1.0
   Compiling nohash-hasher v0.2.0
   Compiling zoomerjoin v0.1.0 (/home/hornik/tmp/scratch/RtmpIgY0nl/R.INSTALL309f168e3c68/zoomerjoin/src/rust)
    Finished `release` profile [optimized] target(s) in 52.13s
rm -Rf /home/hornik/tmp/scratch/RtmpIgY0nl/R.INSTALL309f168e3c68/zoomerjoin/src/.cargo /home/hornik/tmp/scratch/RtmpIgY0nl/R.INSTALL309f168e3c68/zoomerjoin/src/vendor ./rust/target/release/build; \

gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o zoomerjoin.so entrypoint.o -L./rust/target/release -lzoomerjoin -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIgY0nl/R.INSTALL309f168e3c68/zoomerjoin/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIgY0nl/R.INSTALL309f168e3c68/zoomerjoin/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIgY0nl/R.INSTALL309f168e3c68/zoomerjoin/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-zoomerjoin/00new/zoomerjoin/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘zoomerjoin’
    finding HTML links ... done
    dime_data                               html  
    em_link                                 html  
    euclidean-joins                         html  
    euclidean_curve                         html  
    euclidean_probability                   html  
    hamming-joins                           html  
    hamming_distance                        html  
    hamming_probability                     html  
    jaccard-joins                           html  
    jaccard_curve                           html  
    jaccard_hyper_grid_search               html  
    jaccard_probability                     html  
    jaccard_similarity                      html  
    jaccard_string_group                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (zoomerjoin)