- using R version 4.4.3 RC (2025-02-20 r87814)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-16) 14.2.0
GNU Fortran (Debian 14.2.0-16) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘wxgenR/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘wxgenR’ version ‘1.4.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘wxgenR’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the package can be unloaded cleanly ... [2s/3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
- checking loading without being on the library search path ... [3s/4s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [17s/21s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [4s/6s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [51s/95s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Vignette_BlacksburgVA.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/wxgenR.Rcheck/vign_test/wxgenR/vignettes/Vignette_BlacksburgVA_files/figure-html/unnamed-chunk-9-1.png
768x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 183797 bytes
Input file size = 184139 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 178892
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 178892
Output IDAT size = 178892 bytes (4905 bytes decrease)
Output file size = 178970 bytes (5169 bytes = 2.81% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/wxgenR.Rcheck/vign_test/wxgenR/vignettes/Vignette_BlacksburgVA_files/figure-html/unnamed-chunk-10-1.png
768x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 237414 bytes
Input file size = 237828 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 231658
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 231658
Output IDAT size = 231658 bytes (5756 bytes decrease)
Output file size = 231736 bytes (6092 bytes = 2.56% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/wxgenR.Rcheck/vign_test/wxgenR/vignettes/Vignette_BlacksburgVA_files/figure-html/unnamed-chunk-12-1.png
768x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 90868 bytes
Input file size = 91078 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74976
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74976
Output IDAT size = 74976 bytes (15892 bytes decrease)
Output file size = 75054 bytes (16024 bytes = 17.59% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/wxgenR.Rcheck/vign_test/wxgenR/vignettes/Vignette_BlacksburgVA_files/figure-html/unnamed-chunk-13-1.png
768x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 90268 bytes
Input file size = 90478 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73896
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73896
Output IDAT size = 73896 bytes (16372 bytes decrease)
Output file size = 73974 bytes (16504 bytes = 18.24% decrease)
--- finished re-building ‘Vignette_BlacksburgVA.Rmd’
--- re-building ‘Vignette_LowerSantaCruzRiverBasinAZ.Rmd’ using rmarkdown
Quitting from lines 198-201 [unnamed-chunk-6] (Vignette_LowerSantaCruzRiverBasinAZ.Rmd)
Error: processing vignette 'Vignette_LowerSantaCruzRiverBasinAZ.Rmd' failed with diagnostics:
The melt generic in data.table has been passed a data.frame and will attempt to redirect to the relevant reshape2 method; please note that reshape2 is superseded and is no longer actively developed, and this redirection is now deprecated. To continue using melt methods from reshape2 while both packages are attached, e.g. melt.list, you can prepend the namespace, i.e. reshape2::melt(.). In the next version, this warning will become an error.
--- failed re-building ‘Vignette_LowerSantaCruzRiverBasinAZ.Rmd’
SUMMARY: processing the following file failed:
‘Vignette_LowerSantaCruzRiverBasinAZ.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [4s/6s] OK
- checking HTML version of manual ... [0s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR