* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘whitebox’ ... ** package ‘whitebox’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘whitebox’ finding HTML links ... done check_whitebox_binary html install_whitebox html sample_dem_data html wbt html wbt_absolute_value html wbt_accumulation_curvature html wbt_activate html wbt_adaptive_filter html wbt_add html wbt_add_point_coordinates_to_table html wbt_aggregate_raster html wbt_and html wbt_anova html wbt_arc_cos html wbt_arc_sin html wbt_arc_tan html wbt_arcosh html wbt_arsinh html wbt_artanh html wbt_ascii_to_las html wbt_aspect html wbt_assess_route html wbt_atan2 html wbt_attribute_correlation html wbt_attribute_correlation_neighbourhood_analysis html wbt_attribute_histogram html wbt_attribute_scattergram html wbt_average_flowpath_slope html wbt_average_normal_vector_angular_deviation html wbt_average_overlay html wbt_average_upslope_flowpath_length html wbt_balance_contrast_enhancement html wbt_basins html wbt_bilateral_filter html wbt_block_maximum_gridding html wbt_block_minimum_gridding html wbt_boundary_shape_complexity html wbt_breach_depressions html wbt_breach_depressions_least_cost html wbt_breach_single_cell_pits html wbt_breakline_mapping html wbt_buffer_raster html wbt_burn_streams_at_roads html wbt_canny_edge_detection html wbt_ceil html wbt_centroid html wbt_centroid_vector html wbt_change_vector_analysis html wbt_circular_variance_of_aspect html wbt_classify_buildings_in_lidar html wbt_classify_lidar html wbt_classify_overlap_points html wbt_clean_vector html wbt_clip html wbt_clip_lidar_to_polygon html wbt_clip_raster_to_polygon html wbt_closing html wbt_clump html wbt_colourize_based_on_class html wbt_colourize_based_on_point_returns html wbt_compactness_ratio html wbt_conditional_evaluation html wbt_conditioned_latin_hypercube html wbt_conservative_smoothing_filter html wbt_construct_vector_tin html wbt_contours_from_points html wbt_contours_from_raster html wbt_convert_nodata_to_zero html wbt_convert_raster_format html wbt_corner_detection html wbt_correct_vignetting html wbt_cos html wbt_cosh html wbt_cost_allocation html wbt_cost_distance html wbt_cost_pathway html wbt_count_if html wbt_create_colour_composite html wbt_create_hexagonal_vector_grid html wbt_create_plane html wbt_create_rectangular_vector_grid html wbt_crispness_index html wbt_cross_tabulation html wbt_csv_points_to_vector html wbt_cumulative_distribution html wbt_curvedness html wbt_d8_flow_accumulation html wbt_d8_mass_flux html wbt_d8_pointer html wbt_d_inf_flow_accumulation html wbt_d_inf_mass_flux html wbt_d_inf_pointer html wbt_dbscan html wbt_decrement html wbt_dem_void_filling html wbt_depth_in_sink html wbt_depth_to_water html wbt_dev_from_mean_elev html wbt_diff_from_mean_elev html wbt_diff_of_gaussian_filter html wbt_difference html wbt_difference_curvature html wbt_direct_decorrelation_stretch html wbt_directional_relief html wbt_dissolve html wbt_distance_to_outlet html wbt_diversity_filter html wbt_divide html wbt_downslope_distance_to_stream html wbt_downslope_flowpath_length html wbt_downslope_index html wbt_edge_contamination html wbt_edge_density html wbt_edge_preserving_mean_filter html wbt_edge_proportion html wbt_elev_above_pit html wbt_elev_percentile html wbt_elev_relative_to_min_max html wbt_elev_relative_to_watershed_min_max html wbt_elevation_above_stream html wbt_elevation_above_stream_euclidean html wbt_eliminate_coincident_points html wbt_elongation_ratio html wbt_embankment_mapping html wbt_emboss_filter html wbt_equal_to html wbt_erase html wbt_erase_polygon_from_lidar html wbt_erase_polygon_from_raster html wbt_euclidean_allocation html wbt_euclidean_distance html wbt_evaluate_training_sites html wbt_exp html wbt_exp2 html wbt_export_table_to_csv html wbt_exposure_towards_wind_flux html wbt_extend_vector_lines html wbt_extract_nodes html wbt_extract_raster_values_at_points html wbt_extract_streams html wbt_extract_valleys html wbt_farthest_channel_head html wbt_fast_almost_gaussian_filter html wbt_fd8_flow_accumulation html wbt_fd8_pointer html wbt_feature_preserving_smoothing html wbt_fetch_analysis html wbt_file_path html wbt_fill_burn html wbt_fill_depressions html wbt_fill_depressions_planchon_and_darboux html wbt_fill_depressions_wang_and_liu html wbt_fill_missing_data html wbt_fill_single_cell_pits html wbt_filter_lidar html wbt_filter_lidar_classes html wbt_filter_lidar_scan_angles html wbt_filter_raster_features_by_area html wbt_find_flightline_edge_points html wbt_find_lowest_or_highest_points html wbt_find_main_stem html wbt_find_no_flow_cells html wbt_find_parallel_flow html wbt_find_patch_or_class_edge_cells html wbt_find_ridges html wbt_fix_dangling_arcs html wbt_flatten_lakes html wbt_flightline_overlap html wbt_flip_image html wbt_flood_order html wbt_floor html wbt_flow_accumulation_full_workflow html wbt_flow_length_diff html wbt_gamma_correction html wbt_gaussian_contrast_stretch html wbt_gaussian_curvature html wbt_gaussian_filter html wbt_gaussian_scale_space html wbt_generalize_classified_raster html wbt_generalize_with_similarity html wbt_generating_function html wbt_geomorphons html wbt_greater_than html wbt_hack_stream_order html wbt_heat_map html wbt_height_above_ground html wbt_help html wbt_high_pass_bilateral_filter html wbt_high_pass_filter html wbt_high_pass_median_filter html wbt_highest_position html wbt_hillshade html wbt_hillslopes html wbt_histogram_equalization html wbt_histogram_matching html wbt_histogram_matching_two_images html wbt_hole_proportion html wbt_horizon_angle html wbt_horizontal_excess_curvature html wbt_horton_stream_order html wbt_hydrologic_connectivity html wbt_hypsometric_analysis html wbt_hypsometrically_tinted_hillshade html wbt_idw_interpolation html wbt_ihs_to_rgb html wbt_image_autocorrelation html wbt_image_correlation html wbt_image_correlation_neighbourhood_analysis html wbt_image_regression html wbt_image_segmentation html wbt_image_slider html wbt_image_stack_profile html wbt_impoundment_size_index html wbt_in_place_add html wbt_in_place_divide html wbt_in_place_multiply html wbt_in_place_subtract html wbt_increment html wbt_individual_tree_detection html wbt_init html wbt_insert_dams html wbt_install_wb_extension html wbt_integer_division html wbt_integral_image html wbt_intersect html wbt_inverse_principal_component_analysis html wbt_is_no_data html wbt_isobasins html wbt_jenson_snap_pour_points html wbt_join_tables html wbt_k_means_clustering html wbt_k_nearest_mean_filter html wbt_kappa_index html wbt_knn_classification html wbt_knn_regression html wbt_ks_test_for_normality html wbt_laplacian_filter html wbt_laplacian_of_gaussian_filter html wbt_las_to_ascii html wbt_las_to_laz html wbt_las_to_multipoint_shapefile html wbt_las_to_shapefile html wbt_las_to_zlidar html wbt_launch_runner html wbt_launch_wb_runner html wbt_layer_footprint html wbt_laz_to_las html wbt_lee_sigma_filter html wbt_length_of_upstream_channels html wbt_less_than html wbt_license html wbt_lidar_block_maximum html wbt_lidar_block_minimum html wbt_lidar_classify_subset html wbt_lidar_colourize html wbt_lidar_contour html wbt_lidar_digital_surface_model html wbt_lidar_eigenvalue_features html wbt_lidar_elevation_slice html wbt_lidar_ground_point_filter html wbt_lidar_hex_binning html wbt_lidar_hillshade html wbt_lidar_histogram html wbt_lidar_idw_interpolation html wbt_lidar_info html wbt_lidar_join html wbt_lidar_kappa_index html wbt_lidar_nearest_neighbour_gridding html wbt_lidar_point_density html wbt_lidar_point_return_analysis html wbt_lidar_point_stats html wbt_lidar_ransac_planes html wbt_lidar_rbf_interpolation html wbt_lidar_remove_duplicates html wbt_lidar_remove_outliers html wbt_lidar_rooftop_analysis html wbt_lidar_segmentation html wbt_lidar_segmentation_based_filter html wbt_lidar_shift html wbt_lidar_sibson_interpolation html wbt_lidar_sort_by_time html wbt_lidar_thin html wbt_lidar_thin_high_density html wbt_lidar_tile html wbt_lidar_tile_footprint html wbt_lidar_tin_gridding html wbt_lidar_tophat_transform html wbt_line_detection_filter html wbt_line_intersections html wbt_line_thinning html wbt_linearity_index html wbt_lines_to_polygons html wbt_list_tools html wbt_list_unique_values html wbt_list_unique_values_raster html wbt_ln html wbt_local_hypsometric_analysis html wbt_local_quadratic_regression html wbt_log10 html wbt_log2 html wbt_logistic_regression html wbt_long_profile html wbt_long_profile_from_points html wbt_longest_flowpath html wbt_low_points_on_headwater_divides html wbt_lowest_position html wbt_majority_filter html wbt_map_off_terrain_objects html wbt_max html wbt_max_absolute_overlay html wbt_max_anisotropy_dev html wbt_max_anisotropy_dev_signature html wbt_max_branch_length html wbt_max_difference_from_mean html wbt_max_downslope_elev_change html wbt_max_elev_dev_signature html wbt_max_elevation_deviation html wbt_max_overlay html wbt_max_upslope_elev_change html wbt_max_upslope_flowpath_length html wbt_max_upslope_value html wbt_maximal_curvature html wbt_maximum_filter html wbt_md_inf_flow_accumulation html wbt_mean_curvature html wbt_mean_filter html wbt_median_filter html wbt_medoid html wbt_merge_line_segments html wbt_merge_table_with_csv html wbt_merge_vectors html wbt_min html wbt_min_absolute_overlay html wbt_min_dist_classification html wbt_min_downslope_elev_change html wbt_min_max_contrast_stretch html wbt_min_overlay html wbt_minimal_curvature html wbt_minimum_bounding_box html wbt_minimum_bounding_circle html wbt_minimum_bounding_envelope html wbt_minimum_convex_hull html wbt_minimum_filter html wbt_modified_k_means_clustering html wbt_modify_lidar html wbt_modify_no_data_value html wbt_modulo html wbt_mosaic html wbt_mosaic_with_feathering html wbt_multi_part_to_single_part html wbt_multidirectional_hillshade html wbt_multiply html wbt_multiply_overlay html wbt_multiscale_curvatures html wbt_multiscale_elevation_percentile html wbt_multiscale_roughness html wbt_multiscale_roughness_signature html wbt_multiscale_std_dev_normals html wbt_multiscale_std_dev_normals_signature html wbt_multiscale_topographic_position_image html wbt_narrowness_index html wbt_natural_neighbour_interpolation html wbt_nearest_neighbour_gridding html wbt_negate html wbt_new_raster_from_base html wbt_normal_vectors html wbt_normalize_lidar html wbt_normalized_difference_index html wbt_not html wbt_not_equal_to html wbt_num_downslope_neighbours html wbt_num_inflowing_neighbours html wbt_num_upslope_neighbours html wbt_olympic_filter html wbt_opening html wbt_openness html wbt_or html wbt_paired_sample_t_test html wbt_panchromatic_sharpening html wbt_parallelepiped_classification html wbt_patch_orientation html wbt_pennock_landform_class html wbt_percent_elev_range html wbt_percent_equal_to html wbt_percent_greater_than html wbt_percent_less_than html wbt_percentage_contrast_stretch html wbt_percentile_filter html wbt_perimeter_area_ratio html wbt_phi_coefficient html wbt_pick_from_list html wbt_piecewise_contrast_stretch html wbt_plan_curvature html wbt_polygon_area html wbt_polygon_long_axis html wbt_polygon_perimeter html wbt_polygon_short_axis html wbt_polygonize html wbt_polygons_to_lines html wbt_power html wbt_prewitt_filter html wbt_principal_component_analysis html wbt_print_geo_tiff_tags html wbt_profile html wbt_profile_curvature html wbt_qin_flow_accumulation html wbt_quantiles html wbt_quinn_flow_accumulation html wbt_radial_basis_function_interpolation html wbt_radius_of_gyration html wbt_raise_walls html wbt_random_field html wbt_random_forest_classification html wbt_random_forest_regression html wbt_random_sample html wbt_range_filter html wbt_raster_area html wbt_raster_calculator html wbt_raster_cell_assignment html wbt_raster_histogram html wbt_raster_perimeter html wbt_raster_streams_to_vector html wbt_raster_summary_stats html wbt_raster_to_vector_lines html wbt_raster_to_vector_points html wbt_raster_to_vector_polygons html wbt_rasterize_streams html wbt_reciprocal html wbt_reclass html wbt_reclass_equal_interval html wbt_reclass_from_file html wbt_reconcile_multiple_headers html wbt_recover_flightline_info html wbt_recreate_pass_lines html wbt_reinitialize_attribute_table html wbt_related_circumscribing_circle html wbt_relative_aspect html wbt_relative_topographic_position html wbt_remove_field_edge_points html wbt_remove_off_terrain_objects html wbt_remove_polygon_holes html wbt_remove_raster_polygon_holes html wbt_remove_short_streams html wbt_remove_spurs html wbt_repair_stream_vector_topology html wbt_resample html wbt_rescale_value_range html wbt_rgb_to_ihs html wbt_rho8_flow_accumulation html wbt_rho8_pointer html wbt_ring_curvature html wbt_river_centerlines html wbt_roberts_cross_filter html wbt_root_mean_square_error html wbt_rotor html wbt_round html wbt_ruggedness_index html wbt_run_tool html wbt_rust_backtrace html wbt_scharr_filter html wbt_sediment_transport_index html wbt_select_tiles_by_polygon html wbt_set_nodata_value html wbt_shadow_animation html wbt_shadow_image html wbt_shape_complexity_index html wbt_shape_complexity_index_raster html wbt_shape_index html wbt_shreve_stream_magnitude html wbt_sigmoidal_contrast_stretch html wbt_sin html wbt_single_part_to_multi_part html wbt_sinh html wbt_sink html wbt_slope html wbt_slope_vs_aspect_plot html wbt_slope_vs_elevation_plot html wbt_smooth_vectors html wbt_smooth_vegetation_residual html wbt_snap_pour_points html wbt_sobel_filter html wbt_sort_lidar html wbt_source html wbt_spherical_std_dev_of_normals html wbt_split_colour_composite html wbt_split_lidar html wbt_split_vector_lines html wbt_split_with_lines html wbt_square html wbt_square_root html wbt_standard_deviation_contrast_stretch html wbt_standard_deviation_filter html wbt_standard_deviation_of_slope html wbt_stochastic_depression_analysis html wbt_strahler_order_basins html wbt_strahler_stream_order html wbt_stream_link_class html wbt_stream_link_identifier html wbt_stream_link_length html wbt_stream_link_slope html wbt_stream_power_index html wbt_stream_slope_continuous html wbt_subbasins html wbt_subtract html wbt_sum_overlay html wbt_surface_area_ratio html wbt_svm_classification html wbt_svm_regression html wbt_symmetrical_difference html wbt_tan html wbt_tangential_curvature html wbt_tanh html wbt_thicken_raster_line html wbt_time_in_daylight html wbt_tin_gridding html wbt_to_degrees html wbt_to_radians html wbt_tool_help html wbt_tool_parameters html wbt_toolbox html wbt_tophat_transform html wbt_topo_render html wbt_topographic_position_animation html wbt_topological_stream_order html wbt_total_curvature html wbt_total_filter html wbt_trace_downslope_flowpaths html wbt_travelling_salesman_problem html wbt_trend_surface html wbt_trend_surface_vector_points html wbt_tributary_identifier html wbt_truncate html wbt_turning_bands_simulation html wbt_two_sample_ks_test html wbt_union html wbt_unnest_basins html wbt_unsharp_masking html wbt_unsphericity html wbt_update_nodata_cells html wbt_upslope_depression_storage html wbt_user_defined_weights_filter html wbt_vector_hex_binning html wbt_vector_lines_to_raster html wbt_vector_points_to_raster html wbt_vector_polygons_to_raster html wbt_vector_stream_network_analysis html wbt_version html wbt_vertical_excess_curvature html wbt_view_code html wbt_viewshed html wbt_visibility_index html wbt_voronoi_diagram html wbt_watershed html wbt_weighted_overlay html wbt_weighted_sum html wbt_wetness_index html wbt_wilcoxon_signed_rank_test html wbt_write_function_memory_insertion html wbt_xor html wbt_yield_filter html wbt_yield_map html wbt_yield_normalization html wbt_z_scores html wbt_zlidar_to_las html wbt_zonal_statistics html wbttoolparameters html wbttools html whitebox-package html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (whitebox)