* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘weightedScores’ ...
** package ‘weightedScores’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.3.0-1) 13.3.0’
make[1]: Entering directory '/tmp/Rtmp4YUC7j/R.INSTALL1d122835f5f34e/weightedScores/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvnapp.c -o mvnapp.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvnscher.c -o mvnscher.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvnsub.c -o mvnsub.o
mvnsub.c: In function ‘mvn2’:
mvnsub.c:253:11: warning: variable ‘rr’ set but not used [-Wunused-but-set-variable]
253 | double rr[M][M];
| ^~
mvnsub.c: In function ‘approx2’:
mvnsub.c:411:24: warning: variable ‘m1’ set but not used [-Wunused-but-set-variable]
411 | int ii,a1,a2,a3,idt,m1,a4;
| ^~
mvnsub.c: In function ‘nexper’:
mvnsub.c:488:15: warning: variable ‘nm3’ set but not used [-Wunused-but-set-variable]
488 | { int s,d,i,j,nm3,j1,j2,ia,l,i1,m;
| ^~~
mvnsub.c:516:7: warning: ‘l’ may be used uninitialized [-Wmaybe-uninitialized]
516 | a[l]=ia; a[i1]=m; *even=1; return;
| ^
mvnsub.c:488:28: note: ‘l’ was declared here
488 | { int s,d,i,j,nm3,j1,j2,ia,l,i1,m;
| ^
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pbnorm.c -o pbnorm.o
pbnorm.c: In function ‘bivnor’:
pbnorm.c:27:8: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
27 | if(b<0.) b=0.; if(b>1.) b=1.; return(b);
| ^~
pbnorm.c:27:23: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
27 | if(b<0.) b=0.; if(b>1.) b=1.; return(b);
| ^~
pbnorm.c:32:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
32 | if(b<0.) b=0.; if(b>1.) b=1.; return(b);
| ^~
pbnorm.c:32:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
32 | if(b<0.) b=0.; if(b>1.) b=1.; return(b);
| ^~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phi.c -o phi.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pmnorm.c -o pmnorm.o
pmnorm.c:26:27: warning: missing braces around initializer [-Wmissing-braces]
26 | static double coef[6][4]={0.0, 0.0, 0.0, 0.0,
| ^
| { }
27 | 0.0, 0.311111111111111, 0.333333333333333, 0.5,
| { }
28 | 0.0, 1.422222222222222, 0.0, 0.0,
| { }
29 | 0.0, 0.533333333333333, 1.333333333333333, 0.0,
| { }
30 | 0.0, 1.422222222222222, 0.0, 0.0,
| { }
31 | 0.0, 0.311111111111111, 0.333333333333333, 0.5 };
| { }
pmnorm.c: In function ‘mulnor’:
pmnorm.c:174:10: warning: ‘simps’ may be used uninitialized [-Wmaybe-uninitialized]
174 | if(simps==0)
| ^
pmnorm.c:45:9: note: ‘simps’ was declared here
45 | int simps,ipr;
| ^~~~~
pmnorm.c:321:14: warning: ‘rho’ may be used uninitialized [-Wmaybe-uninitialized]
321 | ans[l] = bivnor(x1, x2, rho);
| ^~~~~~~~~~~~~~~~~~~
pmnorm.c:47:34: note: ‘rho’ was declared here
47 | eplos, epsi, ept, fac, fsa, rho, sigc, t, tem, temb, temp, wb,
| ^~~
pmnorm.c:318:8: warning: ‘sd[1]’ may be used uninitialized [-Wmaybe-uninitialized]
318 | x1 = fac * (xss[nm1][nm1] - d[1]) / sd[1];
| ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pmnorm.c:37:32: note: ‘sd[1]’ was declared here
37 | double c[8], d[8], co[26], sd[3];
| ^~
pmnorm.c:319:8: warning: ‘sd[2]’ may be used uninitialized [-Wmaybe-uninitialized]
319 | x2 = fac * (xss[nm2][nm1] - d[2]) / sd[2];
| ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pmnorm.c:37:32: note: ‘sd[2]’ was declared here
37 | double c[8], d[8], co[26], sd[3];
| ^~
pmnorm.c:226:22: warning: ‘mjs’ may be used uninitialized [-Wmaybe-uninitialized]
226 | { for(i=njs;i<=mjs;i++)
| ~^~~~~
pmnorm.c:63:41: note: ‘mjs’ was declared here
63 | int i,j,k,ij,ik,jk,l,jn,nm1,nm2,inj,mjs,ll,iend,igo,indl,ien,ijk,ni;
| ^~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pnorms.c -o pnorms.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c posdef.c -o posdef.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r_mvn1der.c -o r_mvn1der.o
r_mvn1der.c: In function ‘r_mvndu’:
r_mvn1der.c:112:20: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
112 | if((*ksign)>0) bb=b[m]; else bb=a[m];
| ~~^~~~~
r_mvn1der.c:77:30: note: ‘b’ declared here
77 | double rr[M][M],mu[M],a[M],b[M],rc[M][M],dd[M];
| ^
r_mvn1der.c:112:34: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
112 | if((*ksign)>0) bb=b[m]; else bb=a[m];
| ~~^~~~~
r_mvn1der.c:77:25: note: ‘a’ declared here
77 | double rr[M][M],mu[M],a[M],b[M],rc[M][M],dd[M];
| ^
r_mvn1der.c: In function ‘r_mvndrh’:
r_mvn1der.c:189:10: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
189 | tem=b[m1]; b[m1]=b[j1]; b[j1]=tem;
| ~~~^~~~~~
r_mvn1der.c:152:24: note: ‘b’ declared here
152 | double rr[M][M],a[M],b[M],rc[M][M],dd[M];
| ^
r_mvn1der.c:188:10: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
188 | tem=a[m1]; a[m1]=a[j1]; a[j1]=tem;
| ~~~^~~~~~
r_mvn1der.c:152:19: note: ‘a’ declared here
152 | double rr[M][M],a[M],b[M],rc[M][M],dd[M];
| ^
r_mvn1der.c:220:5: warning: ‘rr’ may be used uninitialized [-Wmaybe-uninitialized]
220 | rh=rr[m1][m]; r1=1./(1.-rh*rh);
| ~~^~~~~~~~~~
r_mvn1der.c:152:10: note: ‘rr’ declared here
152 | double rr[M][M],a[M],b[M],rc[M][M],dd[M];
| ^~
r_mvn1der.c:258:20: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
258 | if(a[m1]>-6. && a[m]>-6.)
| ~^~~
r_mvn1der.c:152:19: note: ‘a’ declared here
152 | double rr[M][M],a[M],b[M],rc[M][M],dd[M];
| ^
r_mvn1der.c:258:7: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
258 | if(a[m1]>-6. && a[m]>-6.)
| ~^~~~
r_mvn1der.c:152:19: note: ‘a’ declared here
152 | double rr[M][M],a[M],b[M],rc[M][M],dd[M];
| ^
r_mvn1der.c:189:25: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
189 | tem=b[m1]; b[m1]=b[j1]; b[j1]=tem;
| ~^~~~
r_mvn1der.c:152:24: note: ‘b’ declared here
152 | double rr[M][M],a[M],b[M],rc[M][M],dd[M];
| ^
r_mvn1der.c:188:25: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
188 | tem=a[m1]; a[m1]=a[j1]; a[j1]=tem;
| ~^~~~
r_mvn1der.c:152:19: note: ‘a’ declared here
152 | double rr[M][M],a[M],b[M],rc[M][M],dd[M];
| ^
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r_mvn2der.c -o r_mvn2der.o
r_mvn2der.c: In function ‘r_mvndu2’:
r_mvn2der.c:112:20: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
112 | if((*ksign)>0) bb=b[m]; else bb=a[m];
| ~~^~~~~
r_mvn2der.c:78:30: note: ‘b’ declared here
78 | double rr[M][M],mu[M],a[M],b[M],rc[M][M],dd[M];
| ^
r_mvn2der.c:112:34: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
112 | if((*ksign)>0) bb=b[m]; else bb=a[m];
| ~~^~~~~
r_mvn2der.c:78:25: note: ‘a’ declared here
78 | double rr[M][M],mu[M],a[M],b[M],rc[M][M],dd[M];
| ^
r_mvn2der.c: In function ‘r_mvndrh2’:
r_mvn2der.c:188:10: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
188 | tem=b[m1]; b[m1]=b[j1]; b[j1]=tem;
| ~~~^~~~~~
r_mvn2der.c:151:24: note: ‘b’ declared here
151 | double rr[M][M],a[M],b[M],rc[M][M],dd[M];
| ^
r_mvn2der.c:187:10: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
187 | tem=a[m1]; a[m1]=a[j1]; a[j1]=tem;
| ~~~^~~~~~
r_mvn2der.c:151:19: note: ‘a’ declared here
151 | double rr[M][M],a[M],b[M],rc[M][M],dd[M];
| ^
r_mvn2der.c:219:5: warning: ‘rr’ may be used uninitialized [-Wmaybe-uninitialized]
219 | rh=rr[m1][m]; r1=1./(1.-rh*rh);
| ~~^~~~~~~~~~
r_mvn2der.c:151:10: note: ‘rr’ declared here
151 | double rr[M][M],a[M],b[M],rc[M][M],dd[M];
| ^~
r_mvn2der.c:257:20: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
257 | if(a[m1]>-6. && a[m]>-6.)
| ~^~~
r_mvn2der.c:151:19: note: ‘a’ declared here
151 | double rr[M][M],a[M],b[M],rc[M][M],dd[M];
| ^
r_mvn2der.c:257:7: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
257 | if(a[m1]>-6. && a[m]>-6.)
| ~^~~~
r_mvn2der.c:151:19: note: ‘a’ declared here
151 | double rr[M][M],a[M],b[M],rc[M][M],dd[M];
| ^
r_mvn2der.c:188:25: warning: ‘b’ may be used uninitialized [-Wmaybe-uninitialized]
188 | tem=b[m1]; b[m1]=b[j1]; b[j1]=tem;
| ~^~~~
r_mvn2der.c:151:24: note: ‘b’ declared here
151 | double rr[M][M],a[M],b[M],rc[M][M],dd[M];
| ^
r_mvn2der.c:187:25: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized]
187 | tem=a[m1]; a[m1]=a[j1]; a[j1]=tem;
| ~^~~~
r_mvn2der.c:151:19: note: ‘a’ declared here
151 | double rr[M][M],a[M],b[M],rc[M][M],dd[M];
| ^
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o weightedScores.so mvnapp.o mvnscher.o mvnsub.o pbnorm.o phi.o pmnorm.o pnorms.o posdef.o r_mvn1der.o r_mvn2der.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp4YUC7j/R.INSTALL1d122835f5f34e/weightedScores/src'
make[1]: Entering directory '/tmp/Rtmp4YUC7j/R.INSTALL1d122835f5f34e/weightedScores/src'
make[1]: Leaving directory '/tmp/Rtmp4YUC7j/R.INSTALL1d122835f5f34e/weightedScores/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-weightedScores/00new/weightedScores/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘weightedScores’
finding HTML links ... done
CLIC html
approxbvncdf html
arthritis html
bcl html
childvisit html
cl1 html
godambe html
iee html
iee.ord html
marglik html
margmodel html
mvn.deriv html
mvnapp html
scoreCov html
solvewtsc html
toenail html
weightMat html
weightedScores-package html
wtsc html
wtsc.wrapper html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (weightedScores)