* using log directory ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/vpc.Rcheck’
* using R version 4.4.3 RC (2025-02-20 r87814)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-16) 14.2.0
    GNU Fortran (Debian 14.2.0-16) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘vpc/DESCRIPTION’ ... OK
* this is package ‘vpc’ version ‘1.2.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘vpc’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-patched-linux-x86_64/vpc-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s/15s] OK
* checking Rd files ... [1s/1s] NOTE
checkRd: (-1) new_vpc_theme.Rd:21: Lost braces; missing escapes or markup?
    21 |  \item{obs_color}: {color for observations points}
       |                    ^
checkRd: (-1) new_vpc_theme.Rd:22: Lost braces; missing escapes or markup?
    22 |  \item{obs_size}: {size for observation points}
       |                   ^
checkRd: (-1) new_vpc_theme.Rd:23: Lost braces; missing escapes or markup?
    23 |  \item{obs_median_color}: {color for median observation line}
       |                           ^
checkRd: (-1) new_vpc_theme.Rd:24: Lost braces; missing escapes or markup?
    24 |  \item{obs_median_linetype}: {linetype for median observation line}
       |                              ^
checkRd: (-1) new_vpc_theme.Rd:25: Lost braces; missing escapes or markup?
    25 |  \item{obs_median_size}: {size for median observation line}
       |                          ^
checkRd: (-1) new_vpc_theme.Rd:26: Lost braces; missing escapes or markup?
    26 |  \item{obs_ci_fill}: {color for observation CI fill}
       |                      ^
checkRd: (-1) new_vpc_theme.Rd:27: Lost braces; missing escapes or markup?
    27 |  \item{obs_ci_color}: {color for observation CI lines}
       |                       ^
checkRd: (-1) new_vpc_theme.Rd:28: Lost braces; missing escapes or markup?
    28 |  \item{obs_ci_linetype}: {linetype for observation CI lines}
       |                          ^
checkRd: (-1) new_vpc_theme.Rd:29: Lost braces; missing escapes or markup?
    29 |  \item{obs_ci_size}: {size for observations CI lines}
       |                      ^
checkRd: (-1) new_vpc_theme.Rd:30: Lost braces; missing escapes or markup?
    30 |  \item{sim_pi_fill}: {fill color for simulated prediction interval areas}
       |                      ^
checkRd: (-1) new_vpc_theme.Rd:31: Lost braces; missing escapes or markup?
    31 |  \item{sim_pi_alpha}: {transparency for simulated prediction interval areas}
       |                       ^
checkRd: (-1) new_vpc_theme.Rd:32: Lost braces; missing escapes or markup?
    32 |  \item{sim_pi_color}: {color for simulated prediction interval lines}
       |                       ^
checkRd: (-1) new_vpc_theme.Rd:33: Lost braces; missing escapes or markup?
    33 |  \item{sim_pi_linetype}: {linetype for simulated prediction interval lines}
       |                          ^
checkRd: (-1) new_vpc_theme.Rd:34: Lost braces; missing escapes or markup?
    34 |  \item{sim_pi_size}: {size for simulated prediction interval lines}
       |                      ^
checkRd: (-1) new_vpc_theme.Rd:35: Lost braces; missing escapes or markup?
    35 |  \item{sim_median_fill}: {fill color for simulated median area}
       |                          ^
checkRd: (-1) new_vpc_theme.Rd:36: Lost braces; missing escapes or markup?
    36 |  \item{sim_median_alpha}: {transparency for simulated median area}
       |                           ^
checkRd: (-1) new_vpc_theme.Rd:37: Lost braces; missing escapes or markup?
    37 |  \item{sim_median_color}: {color for simulated median line}
       |                           ^
checkRd: (-1) new_vpc_theme.Rd:38: Lost braces; missing escapes or markup?
    38 |  \item{sim_median_linetype}: {linetype for simulated median line}
       |                              ^
checkRd: (-1) new_vpc_theme.Rd:39: Lost braces; missing escapes or markup?
    39 |  \item{sim_median_size}: {size for simulated median line}
       |                          ^
checkRd: (-1) new_vpc_theme.Rd:40: Lost braces; missing escapes or markup?
    40 |  \item{bin_separators_color}: {color for bin separator lines, NA for don't plot}
       |                               ^
checkRd: (-1) new_vpc_theme.Rd:41: Lost braces; missing escapes or markup?
    41 |  \item{bin_separators_location}: {where to plot bin separators ("t" for top, "b" for bottom)}
       |                                  ^
checkRd: (-1) new_vpc_theme.Rd:42: Lost braces; missing escapes or markup?
    42 |  \item{loq_color}: {color of line showing limit of quantification}
       |                    ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [22s/26s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [43s/52s] OK
  Running ‘test-add_sim_index_number.R’ [10s/13s]
  Running ‘test-filter_dv.R’ [1s/1s]
  Running ‘test-labeller.R’ [5s/6s]
  Running ‘test-scales.R’ [5s/5s]
  Running ‘test-softwaretype.R’ [1s/1s]
  Running ‘test-strat-col-detection.R’ [1s/1s]
  Running ‘test-vpc.R’ [4s/5s]
  Running ‘test-vpc_cat.R’ [2s/3s]
  Running ‘test-vpc_cens.R’ [5s/7s]
  Running ‘test-vpc_tte.R’ [8s/10s]
* checking PDF version of manual ... [5s/6s] OK
* checking HTML version of manual ... [1s/2s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 NOTE