* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘trtswitch’ ...
** package ‘trtswitch’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-6) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplscMmv/R.INSTALL15562b5fc3003c/trtswitch/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ipcw.cpp -o ipcw.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ipe.cpp -o ipe.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c logistic_regression.cpp -o logistic_regression.o
logistic_regression.cpp: In function ‘double logisregplloop(int, Rcpp::NumericVector, void*, int, double, bool, int, int, double)’:
logistic_regression.cpp:456:3: warning: ‘fail’ may be used uninitialized [-Wmaybe-uninitialized]
456 | if (fail) {
| ^~
logistic_regression.cpp:352:8: note: ‘fail’ was declared here
352 | bool fail;
| ^~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rpsftm.cpp -o rpsftm.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c splines.cpp -o splines.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c survival_analysis.cpp -o survival_analysis.o
survival_analysis.cpp: In function ‘double phregplloop(int, Rcpp::NumericVector, void*, int, double, bool, int, int, double)’:
survival_analysis.cpp:4817:3: warning: ‘fail’ may be used uninitialized [-Wmaybe-uninitialized]
4817 | if (fail) {
| ^~
survival_analysis.cpp:4715:8: note: ‘fail’ was declared here
4715 | bool fail;
| ^~~~
survival_analysis.cpp: In function ‘double liferegplloop(int, Rcpp::NumericVector, void*, int, double, int, int, double)’:
survival_analysis.cpp:3165:3: warning: ‘fail’ may be used uninitialized [-Wmaybe-uninitialized]
3165 | if (fail) {
| ^~
survival_analysis.cpp:3053:8: note: ‘fail’ was declared here
3053 | bool fail;
| ^~~~
survival_analysis.cpp: In function ‘Rcpp::DataFrame rmest(Rcpp::DataFrame, const Rcpp::StringVector&, const Rcpp::StringVector&, std::string, std::string, double, double, bool)’:
survival_analysis.cpp:1213:27: warning: ‘nevent’ may be used uninitialized [-Wmaybe-uninitialized]
1213 | nevent0[index1] = nevent;
survival_analysis.cpp:1179:24: note: ‘nevent’ was declared here
1179 | double t, nrisk, nevent, surv = 1.0;
| ^~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tsegest.cpp -o tsegest.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tsegestsim.cpp -o tsegestsim.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tsesimp.cpp -o tsesimp.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utilities.cpp -o utilities.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o trtswitch.so RcppExports.o ipcw.o ipe.o logistic_regression.o rpsftm.o splines.o survival_analysis.o tsegest.o tsegestsim.o tsesimp.o utilities.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplscMmv/R.INSTALL15562b5fc3003c/trtswitch/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplscMmv/R.INSTALL15562b5fc3003c/trtswitch/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplscMmv/R.INSTALL15562b5fc3003c/trtswitch/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-trtswitch/00new/trtswitch/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘trtswitch’
finding HTML links ... done
aml html
bscpp html
findInterval3 html
heart html
immdef html
ingots html
ipcw html
ipe html
kmest html
liferegr html
logisregr html
lrtest html
nscpp html
phregr html
print.liferegr html
print.logisregr html
print.phregr html
qrcpp html
rawdata html
residuals_phregr html
rmdiff html
rmest html
rpsftm html
sexagg html
shilong html
six html
splineDesigncpp html
survfit_phregr html
tobin html
trtswitch-package html
tsegest html
tsegestsim html
tsesimp html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (trtswitch)