* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘treespace’ ...
** package ‘treespace’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.3.0-1) 13.3.0’
make[1]: Entering directory '/tmp/Rtmp2aLFmA/R.INSTALL21cb2774f66b43/treespace/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c CPP_update_combinations.cpp -o CPP_update_combinations.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o treespace.so CPP_update_combinations.o RcppExports.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp2aLFmA/R.INSTALL21cb2774f66b43/treespace/src'
make[1]: Entering directory '/tmp/Rtmp2aLFmA/R.INSTALL21cb2774f66b43/treespace/src'
make[1]: Leaving directory '/tmp/Rtmp2aLFmA/R.INSTALL21cb2774f66b43/treespace/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-treespace/00new/treespace/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘treespace’
    finding HTML links ... done
    DengueBEASTMCC                          html  
    DengueSeqs                              html  
    DengueTrees                             html  
    dot-render.server.info                  html  
    findGroves                              html  
    findMRCIs                               html  
    fluTrees                                html  
    linearMrca                              html  
    makeCollapsedTree                       html  
    medTree                                 html  
    multiDist                               html  
    plotGroves                              html  
    finding level-2 HTML links ... done

    plotGrovesD3                            html  
    plotTreeDiff                            html  
    refTreeDist                             html  
    relatedTreeDist                         html  
    simulateIndTree                         html  
    tipDiff                                 html  
    tipsMRCAdepths                          html  
    treeConcordance                         html  
    treeDist                                html  
    treeVec                                 html  
    treespace                               html  
    treespaceServer                         html  
    wiwMedTree                              html  
    wiwTreeDist                             html  
    woodmiceTrees                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (treespace)