* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘text.alignment’ ...
** package ‘text.alignment’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGaY8wY/R.INSTALL20f4f551736de5/text.alignment/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c smith_waterman_matrix.cpp -o smith_waterman_matrix.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o text.alignment.so RcppExports.o smith_waterman_matrix.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGaY8wY/R.INSTALL20f4f551736de5/text.alignment/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGaY8wY/R.INSTALL20f4f551736de5/text.alignment/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGaY8wY/R.INSTALL20f4f551736de5/text.alignment/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-text.alignment/00new/text.alignment/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘text.alignment’
    finding HTML links ... done
    smith_waterman                          html  
    smith_waterman_misaligned               html  
    smith_waterman_pairwise                 html  
    tokenize_letters                        html  
    tokenize_spaces_punct                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (text.alignment)