* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘spider’ ...
** this is package ‘spider’ version ‘1.5.0’
** package ‘spider’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘spider’
    finding HTML links ... done
    anoteropsis                             html  
    bestCloseMatch                          html  
Rd warning: bestCloseMatch.Rd:10: missing link ‘dist.dna’
Rd warning: bestCloseMatch.Rd:97: missing link ‘dist.dna’
    blockAlignment                          html  
    cgraph                                  html  
    chaoHaplo                               html  
    checkDNA                                html  
    dataStat                                html  
    dolomedes                               html  
    haploAccum                              html  
    heatmapSpp                              html  
    is.ambig                                html  
    localMinima                             html  
Rd warning: localMinima.Rd:10: missing link ‘dist.dna’
Rd warning: localMinima.Rd:45: missing link ‘dist.dna’
    maxInDist                               html  
    minInDist                               html  
    monophyly                               html  
Rd warning: monophyly.Rd:16: missing link ‘prop.part’
Rd warning: monophyly.Rd:89: missing link ‘prop.part’
Rd warning: monophyly.Rd:89: missing link ‘root’
Rd warning: monophyly.Rd:90: missing link ‘boot.phylo’
    monophylyBoot                           html  
Rd warning: monophylyBoot.Rd:26: missing link ‘prop.part’
Rd warning: monophylyBoot.Rd:103: missing link ‘prop.part’
Rd warning: monophylyBoot.Rd:103: missing link ‘root’
Rd warning: monophylyBoot.Rd:104: missing link ‘boot.phylo’
    nearNeighbour                           html  
Rd warning: nearNeighbour.Rd:10: missing link ‘dist.dna’
Rd warning: nearNeighbour.Rd:95: missing link ‘dist.dna’
    nonConDist                              html  
    nucDiag                                 html  
    ordinDNA                                html  
    paa                                     html  
    plot.haploAccum                         html  
    plot.ordinDNA                           html  
    plot.slidWin                            html  
    polyBalance                             html  
Rd warning: polyBalance.Rd:22: missing link ‘balance’
Rd warning: polyBalance.Rd:24: missing link ‘balance’
Rd warning: polyBalance.Rd:36: missing link ‘balance’
    rankSlidWin                             html  
    read.BOLD                               html  
    read.GB                                 html  
Rd warning: read.GB.Rd:63: missing link ‘read.GenBank’
    rmSingletons                            html  
    rnucDiag                                html  
    rosenberg                               html  
Rd warning: rosenberg.Rd:56: missing link ‘nodelabels’
    salticidae                              html  
    sarkar                                  html  
    search.BOLD                             html  
    seeBarcode                              html  
    seqStat                                 html  
    slideAnalyses                           html  
Rd warning: slideAnalyses.Rd:82: missing link ‘dist.dna’
    slideBoxplots                           html  
    slideNucDiag                            html  
    slidingWindow                           html  
    spider-package                          html  
Rd warning: spider-package.Rd:49: missing link ‘ape-package’
Rd warning: spider-package.Rd:49: missing link ‘pegas-package’
    sppDist                                 html  
    sppDistMatrix                           html  
    sppVector                               html  
    stats.BOLD                              html  
    tajima.K                                html  
Rd warning: tajima.K.Rd:36: missing link ‘dist.dna’
    tclust                                  html  
Rd warning: tclust.Rd:10: missing link ‘dist.dna’
Rd warning: tclust.Rd:43: missing link ‘dist.dna’
    threshID                                html  
Rd warning: threshID.Rd:10: missing link ‘dist.dna’
Rd warning: threshID.Rd:97: missing link ‘dist.dna’
    threshOpt                               html  
    tiporder                                html  
    titv                                    html  
    tree.comp                               html  
Rd warning: tree.comp.Rd:40: missing link ‘dist.topo’
Rd warning: tree.comp.Rd:50: missing link ‘dist.topo’
Rd warning: tree.comp.Rd:33: missing link ‘dist.topo’
Rd warning: tree.comp.Rd:68: missing link ‘node.depth’
Rd warning: tree.comp.Rd:68: missing link ‘dist.topo’
    woodmouse                               html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spider)