* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘spectralAnalysis’ ...
** package ‘spectralAnalysis’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘smooth’ in package ‘spectralAnalysis’
** help
*** installing help indices
  converting help for package ‘spectralAnalysis’
    finding HTML links ... done
    ElementsToSelect-class                  html  
    ProcessTimes-class                      html  
    ProcessTimesFrame-class                 html  
    RangeToSubset-class                     html  
    SpectraInTime-class                     html  
    SpectraInTimeComp-class                 html  
    SummaryByWavelengths-class              html  
    addMessage                              html  
    addPreprocessingStep                    html  
    baselineCorrect                         html  
    changeDevSettings                       html  
    checkCompatible                         html  
    checkForRedundantSources                html  
    checkIdenticalClass                     html  
    checkMethod                             html  
    checkTimeUnit                           html  
    combineSpectralObjects                  html  
    completeSourceMatrix                    html  
    computeNMFResidu                        html  
    convertListToS4                         html  
    convertS4ToList                         html  
    e                                       html  
    first                                   html  
    firstSpectrum                           html  
    flagVectorInInterval                    html  
    getClosestElements                      html  
    getDefaultSumFunc                       html  
    getDefaultTimeFormat                    html  
    getDimensionReduction                   html  
    getElements                             html  
    getExperimentName                       html  
    getExtraInfo                            html  
    getListOfSpectraExample                 html  
    getNMFInputMatrix                       html  
    getPathProcessTimesExample              html  
    getPreprocessing                        html  
    getProcessTimesExample                  html  
    getProcessTimesFrameExample             html  
    getRange                                html  
    getSpectra                              html  
    getSpectraInTimeCompExample             html  
    getSpectraInTimeExample                 html  
    getSpectralAxis                         html  
    getStartTime                            html  
    getTimeConversionFactor                 html  
    getTimePoints                           html  
    getUnits                                html  
    includeRedundantSources                 html  
    initializeNMFModel                      html  
    last                                    html  
    lastSpectrum                            html  
    loadAllSPCFiles                         html  
    localBaselineCorrect                    html  
    multiplicativeScatterCorrect            html  
    nonNegativePreprocessing                html  
    normalize                               html  
    plotlyAxis                              html  
    predictNNLS                             html  
    preprocess                              html  
    preprocessSpectraInTimeWithList         html  
    r                                       html  
    readProcessTimes                        html  
    readSPC                                 html  
    removeRedundantSources                  html  
    runNMF                                  html  
    saveSpectra                             html  
    scaleNMFResult                          html  
    scatterCorrect                          html  
    scatterCorrectSpectra                   html  
    setExperimentName                       html  
    setTimePointsAlt                        html  
    smooth                                  html  
    spectralIntegration                     html  
    spectralNMF                             html  
    spectralNMFList                         html  
    spectralNormalization                   html  
    spectralPLSCalibration                  html  
    spectralPlsPrediction                   html  
    spectralSmoothAndDifferentiate          html  
    subset-methods                          html  
    subset.SpectraTime                      html  
    testListOfSpectra                       html  
    timeAlign                               html  
    timeAlign.SpectraInTime                 html  
    timeAlign.listOfSpectra                 html  
    trapz                                   html  
    upsampleNMFResult                       html  
    wavelengthAlign                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spectralAnalysis)