* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘spatsurv’ ...
** package ‘spatsurv’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘spatsurv’
    finding HTML links ... done
    B                                       html  
    Bspline.construct                       html  
    BsplineHaz                              html  
    CSplot                                  html  
    Et_PP                                   html  
    EvalCov                                 html  
    ExponentialCovFct                       html  
    FFTgrid                                 html  
    GammaFromY_SPDE                         html  
    GammafromY                              html  
    Independent                             html  
    MCE                                     html  
    NonSpatialLogLikelihood_or_gradient     html  
    PsplineHaz                              html  
    QuadApprox                              html  
    SPDE                                    html  
    SPDEprec                                html  
    SpikedExponentialCovFct                 html  
    Summarise                               html  
    TwoWayHazAdditive                       html  
    YFromGamma_SPDE                         html  
    YfromGamma                              html  
    allocate                                html  
    alpha                                   html  
    baseHazST                               html  
    basehazard                              html  
    basehazard.basehazardspec               html  
    baselinehazard                          html  
    baselinehazard_multiWay                 html  
    betapriorGauss                          html  
    blockDiag                               html  
    boxplotRisk                             html  
    checkSurvivalData                       html  
    circulant                               html  
    circulant.matrix                        html  
    circulant.numeric                       html  
    circulantij                             html  
    covmodel                                html  
    cumbasehazard                           html  
    cumbasehazard.basehazardspec            html  
    cumulativeBspline.construct             html  
    density_PP                              html  
    densityquantile                         html  
    densityquantile.basehazardspec          html  
    densityquantile_PP                      html  
    derivindepGaussianprior                 html  
    derivindepGaussianpriorST               html  
    derivpsplineprior                       html  
    distinfo                                html  
    distinfo.basehazardspec                 html  
    dot-onAttach                            html  
    estimateY                               html  
    etapriorGauss                           html  
    exponentialHaz                          html  
    fixParHaz                               html  
    fixedpars                               html  
    fixmatrix                               html  
    frailtylag1                             html  
    fs                                      html  
    fstimes                                 html  
    gamma2risk                              html  
    gencens                                 html  
    getBbasis                               html  
    getGrid                                 html  
    getOptCellwidth                         html  
    getbb                                   html  
    getcov                                  html  
    getgrd                                  html  
    getleneta                               html  
    getparranges                            html  
    getsurvdata                             html  
    gompertzHaz                             html  
    gradbasehazard                          html  
    gradbasehazard.basehazardspec           html  
    gradcumbasehazard                       html  
    gradcumbasehazard.basehazardspec        html  
    grid2spdf                               html  
    grid2spix                               html  
    grid2spts                               html  
    gridY                                   html  
    gridY_polygonal                         html  
    guess_t                                 html  
    hasNext                                 html  
    hasNext.iter                            html  
    hazard_PP                               html  
    hazardexceedance                        html  
    hazardpars                              html  
    hessbasehazard                          html  
    hessbasehazard.basehazardspec           html  
    hesscumbasehazard                       html  
    hesscumbasehazard.basehazardspec        html  
    imputationModel                         html  
    indepGaussianprior                      html  
    indepGaussianpriorST                    html  
    inference.control                       html  
    insert                                  html  
    invtransformweibull                     html  
    is.burnin                               html  
    is.retain                               html  
    iteration                               html  
    logPosterior                            html  
    logPosterior_SPDE                       html  
    logPosterior_gridded                    html  
    logPosterior_polygonal                  html  
    loop.mcmc                               html  
    makehamHaz                              html  
    maxlikparamPHsurv                       html  
    mcmcLoop                                html  
    mcmcPriors                              html  
    mcmcProgressNone                        html  
    mcmcProgressPrint                       html  
    mcmcProgressTextBar                     html  
    mcmcpars                                html  
    midpts                                  html  
    multiWayHaz                             html  
    neighLocs                               html  
    neighOrder                              html  
    nextStep                                html  
    omegapriorGauss                         html  
    omegapriorGaussST                       html  
    optifix                                 html  
    plot.FFTgrid                            html  
    plotsurv                                html  
    polyadd                                 html  
    polymult                                html  
    posteriorcov                            html  
    predict.mcmcspatsurv                    html  
    print.mcmc                              html  
    print.mcmcspatsurv                      html  
    print.mlspatsurv                        html  
    print.textSummary                       html  
    priorposterior                          html  
    proposalVariance                        html  
    proposalVariance_SPDE                   html  
    proposalVariance_gridded                html  
    proposalVariance_polygonal              html  
    psplineRWprior                          html  
    psplineprior                            html  
    quantile.mcmcspatsurv                   html  
    quantile.mlspatsurv                     html  
    randompars                              html  
    reconstruct.bs                          html  
    reconstruct.bs.coxph                    html  
    reconstruct.bs.mcmcspatsurv             html  
    resetLoop                               html  
    residuals.mcmcspatsurv                  html  
    rootWeibullHaz                          html  
    setTxtProgressBar2                      html  
    setupHazard                             html  
    setupPrecMatStruct                      html  
    showGrid                                html  
    simsurv                                 html  
    spatialpars                             html  
    spatsurv-package                        html  
    spatsurvVignette                        html  
    summary.mcmc                            html  
    summary.mcmcspatsurv                    html  
    surv3d                                  html  
    survival_PP                             html  
    survspat                                html  
    survspatNS                              html  
    textSummary                             html  
    timevaryingPL                           html  
    tpowHaz                                 html  
    transformweibull                        html  
    txtProgressBar2                         html  
    vcov.mcmcspatsurv                       html  
    vcov.mlspatsurv                         html  
    weibullHaz                              html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spatsurv)