* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘spatsurv’ ... ** package ‘spatsurv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘spatsurv’ finding HTML links ... done B html Bspline.construct html BsplineHaz html CSplot html Et_PP html EvalCov html ExponentialCovFct html FFTgrid html GammaFromY_SPDE html GammafromY html Independent html MCE html NonSpatialLogLikelihood_or_gradient html PsplineHaz html QuadApprox html SPDE html SPDEprec html SpikedExponentialCovFct html Summarise html TwoWayHazAdditive html YFromGamma_SPDE html YfromGamma html allocate html alpha html baseHazST html basehazard html basehazard.basehazardspec html baselinehazard html baselinehazard_multiWay html betapriorGauss html blockDiag html boxplotRisk html checkSurvivalData html circulant html circulant.matrix html circulant.numeric html circulantij html covmodel html cumbasehazard html cumbasehazard.basehazardspec html cumulativeBspline.construct html density_PP html densityquantile html densityquantile.basehazardspec html densityquantile_PP html derivindepGaussianprior html derivindepGaussianpriorST html derivpsplineprior html distinfo html distinfo.basehazardspec html dot-onAttach html estimateY html etapriorGauss html exponentialHaz html fixParHaz html fixedpars html fixmatrix html frailtylag1 html fs html fstimes html gamma2risk html gencens html getBbasis html getGrid html getOptCellwidth html getbb html getcov html getgrd html getleneta html getparranges html getsurvdata html gompertzHaz html gradbasehazard html gradbasehazard.basehazardspec html gradcumbasehazard html gradcumbasehazard.basehazardspec html grid2spdf html grid2spix html grid2spts html gridY html gridY_polygonal html guess_t html hasNext html hasNext.iter html hazard_PP html hazardexceedance html hazardpars html hessbasehazard html hessbasehazard.basehazardspec html hesscumbasehazard html hesscumbasehazard.basehazardspec html imputationModel html indepGaussianprior html indepGaussianpriorST html inference.control html insert html invtransformweibull html is.burnin html is.retain html iteration html logPosterior html logPosterior_SPDE html logPosterior_gridded html logPosterior_polygonal html loop.mcmc html makehamHaz html maxlikparamPHsurv html mcmcLoop html mcmcPriors html mcmcProgressNone html mcmcProgressPrint html mcmcProgressTextBar html mcmcpars html midpts html multiWayHaz html neighLocs html neighOrder html nextStep html omegapriorGauss html omegapriorGaussST html optifix html plot.FFTgrid html plotsurv html polyadd html polymult html posteriorcov html predict.mcmcspatsurv html print.mcmc html print.mcmcspatsurv html print.mlspatsurv html print.textSummary html priorposterior html proposalVariance html proposalVariance_SPDE html proposalVariance_gridded html proposalVariance_polygonal html psplineRWprior html psplineprior html quantile.mcmcspatsurv html quantile.mlspatsurv html randompars html reconstruct.bs html reconstruct.bs.coxph html reconstruct.bs.mcmcspatsurv html resetLoop html residuals.mcmcspatsurv html rootWeibullHaz html setTxtProgressBar2 html setupHazard html setupPrecMatStruct html showGrid html simsurv html spatialpars html spatsurv-package html spatsurvVignette html summary.mcmc html summary.mcmcspatsurv html surv3d html survival_PP html survspat html survspatNS html textSummary html timevaryingPL html tpowHaz html transformweibull html txtProgressBar2 html vcov.mcmcspatsurv html vcov.mlspatsurv html weibullHaz html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spatsurv)