* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘spatgraphs’ ...
** package ‘spatgraphs’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpblKFN8/R.INSTALL25d195747b49e5/spatgraphs/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Graph.cpp -o Graph.o
Graph.cpp: In member function ‘void Graph::sg_geometric(double)’:
Graph.cpp:96:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
96 | for(i=0;i<(pp->size()-1);i++)
| ^~~
Graph.cpp:105:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
105 | if(dbg)Rprintf(" Ok.");
| ^~
Graph.cpp: In member function ‘void Graph::sg_mass_geometric()’:
Graph.cpp:197:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
197 | for(i=0;i<pp->size();i++)
| ^~~
Graph.cpp:208:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
208 | if(dbg)Rprintf(" Ok.");
| ^~
Graph.cpp: In member function ‘void Graph::sg_markcross()’:
Graph.cpp:307:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
307 | for(i=0;i<(pp->size()-1);i++)
| ^~~
Graph.cpp:316:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
316 | if(dbg)Rprintf(" Ok.");
| ^~
Graph.cpp: In member function ‘void Graph::sg_SIG()’:
Graph.cpp:330:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
330 | for(j=0;j<pp->size();j++)
| ^~~
Graph.cpp:332:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
332 | pars.at(i)=dist;
| ^~~~
Graph.cpp: In member function ‘void Graph::sg_RNG()’:
Graph.cpp:399:11: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
399 | if(pp->getDist(&i,&k) < pp->getDist(&i, &j))
| ^~
Graph.cpp:402:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
402 | if(isempty)
| ^~
Graph.cpp: In member function ‘void Graph::sg_sub_RNG()’:
Graph.cpp:423:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
423 | for(l=0; l < edges.at(i).size(); l++){
| ~~^~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Pp.cpp -o Pp.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cut.cpp -o cut.o
cut.cpp: In function ‘Rcpp::List cut_c(Rcpp::List, Rcpp::NumericMatrix, double)’:
cut.cpp:17:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
17 | for(j=0; j < onode.size(); j++) {
| ~~^~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c prune.cpp -o prune.o
prune.cpp: In function ‘Rcpp::List prune_c(Rcpp::List, int, int)’:
prune.cpp:56:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
56 | for(i=0; i < (int)nodelist.at(next-1).size();i++)
| ^~~
prune.cpp:59:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
59 | nodelist.at(next-1).swap(*pnode);
| ^~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c remove_nodes.cpp -o remove_nodes.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatcluster.cpp -o spatcluster.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatgraph.cpp -o spatgraph.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o spatgraphs.so Graph.o Pp.o RcppExports.o cut.o prune.o remove_nodes.o spatcluster.o spatgraph.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpblKFN8/R.INSTALL25d195747b49e5/spatgraphs/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpblKFN8/R.INSTALL25d195747b49e5/spatgraphs/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpblKFN8/R.INSTALL25d195747b49e5/spatgraphs/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-spatgraphs/00new/spatgraphs/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘spatgraphs’
finding HTML links ... done
adj2sg html
as.sg html
as.sgadj html
as.sgc html
cut.sg html
edgeLengths html
is_sg html
plot.sg html
plot.sgadj html
plot.sgc html
plot.sgspectral html
plot3_sg html
print.sg html
print.sgadj html
print.sgc html
prune_sg html
remove_nodes html
sg2adj html
sg2dxf html
sg2igraph html
sg2sparse html
sg2sym html
sg2wadj html
sg_parse_coordinates html
sg_verify_parameters html
shortestPath html
sparse2sg html
spatcluster html
spatgraph html
spectral_sg html
summary.sg html
summary.sgc html
t.sg html
t.sgadj html
weight_sg html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spatgraphs)