* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘spant’ ... ** package ‘spant’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4TCMMF/R.INSTALLf7c9a1747368e/spant/src' gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c lsei.f -o lsei.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c pnnls.f -o pnnls.o gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o spant.so init.o lsei.o pnnls.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4TCMMF/R.INSTALLf7c9a1747368e/spant/src' make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4TCMMF/R.INSTALLf7c9a1747368e/spant/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4TCMMF/R.INSTALLf7c9a1747368e/spant/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-spant/00new/spant/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘spant’ finding HTML links ... done Arg.mrs_data html Conj.mrs_data html Im.mrs_data html Imzap html Mod.mrs_data html Ncoils html Ndyns html Npts html Nspec html Ntrans html Nx html Ny html Nz html Re.mrs_data html abfit_opts html abfit_opts_v1_9_0 html acquire html add_noise html add_noise_spec_snr html align html apodise_xy html append_basis html append_coils html append_dyns html append_regs html apply_axes html apply_mrs html apply_pulse html array2mrs_data html auto_phase html back_extrap_ar html basis2dyn_mrs_data html basis2mrs_data html bbase html bc_als html bc_constant html bc_gauss html bc_poly html bc_spline html beta2lw html bin_spec html calc_coil_noise_cor html calc_coil_noise_sd html calc_design_efficiency html calc_ed_from_lambda html calc_peak_info_vec html calc_sd_poly html calc_spec_diff html calc_spec_snr html check_lcm html check_tqn html circ_mask html coherence_filter html collapse_to_dyns html comb_coils html comb_coils_mrsi_gls html comb_coils_svs_gls html comb_fit_list_fit_tables html comb_fit_list_result_tables html comb_fit_tables html comb_metab_ref html conv_mrs html crop_basis html crop_spec html crop_td_pts html crop_td_pts_end html crop_td_pts_pot html crop_xy html crossprod_3d html decimate_mrs_fd html decimate_mrs_td html deconv_mrs html def_N html def_acq_paras html def_fs html def_ft html def_nuc html def_ref html dicom_reader html diff_mrs html downsample_mrs_fd html downsample_mrs_td html dyn_acq_times html ecc html elliptical_mask html est_noise_sd html fd2td html fd_conv_filt html fd_gauss_smo html find_bids_mrs html find_mrs_files html fit_amps html fit_diags html fit_mrs html fit_res2csv html fit_t1_ti_array html fit_t1_tr_array html fit_t2_te_array html fp_phase html fp_phase_correct html fp_scale html fs html ft_dyns html ft_shift html ft_shift_mat html gausswin_2d html gen_F html gen_F_xy html gen_I html gen_baseline_reg html gen_bold_reg html gen_conv_reg html gen_group_reg html gen_impulse_reg html gen_poly_reg html gen_trap_reg html get_1h_brain_basis_names html get_1h_brain_basis_paras html get_1h_brain_basis_paras_v1 html get_1h_brain_basis_paras_v2 html get_1h_brain_basis_paras_v3 html get_1h_braino_basis_names html get_1h_spectre_basis_names html get_2d_psf html get_acq_paras html get_basis_subset html get_dyns html get_even_dyns html get_fh_dyns html get_fit_map html get_fp html get_guassian_pulse html get_head_dyns html get_lcm_cmd html get_metab html get_mol_names html get_mol_paras html get_mrs_affine html get_mrsi2d_seg html get_mrsi_voi html get_mrsi_voxel html get_mrsi_voxel_xy_psf html get_odd_dyns html get_ref html get_seg_ind html get_sh_dyns html get_slice html get_spin_num html get_subset html get_svs_voi html get_tail_dyns html get_td_amp html get_tqn_cmd html get_uncoupled_mol html get_voi_cog html get_voi_seg html get_voi_seg_psf html get_voxel html glm_spec html glm_spec_fmrs_fl html glm_spec_fmrs_group html glm_spec_group_linhyp html grid_shift_xy html gridplot html gridplot.mrs_data html hsvd html hsvd_filt html hsvd_vec html hz html ift_shift html ift_shift_mat html image.mrs_data html img2kspace_xy html int_spec html interleave_dyns html inv_even_dyns html inv_odd_dyns html is.def html is_fd html kspace2img_xy html l2_reg html lb html lofdc html lw2alpha html lw2beta html make_basis_from_raw html mask_dyns html mask_fit_res html mask_xy html mask_xy_corners html mask_xy_ellipse html mask_xy_mat html mat2mrs_data html matexp html max_mrs html max_mrs_interp html mean.list html mean.mrs_data html mean_dyn_blocks html mean_dyn_pairs html mean_dyns html mean_mrs_list html mean_vec_blocks html median_dyns html mod_td html mrs_data2basis html mrs_data2bids html mrs_data2mat html mrs_data2spec_mat html mrs_data2vec html mvfftshift html mvifftshift html n2coord html nifti_flip_lr html one_page_pdf html ortho3 html ortho3_inter html peak_info html pg_extrap_xy html phase html phase_ref_1h_brain html plot.fit_result html plot.mrs_data html plot_bc html plot_reg html plot_slice_fit html plot_slice_fit_inter html plot_slice_map html plot_slice_map_inter html plot_spec_sd html plot_voi_overlay html plot_voi_overlay_seg html ppm html precomp html preproc_svs html preproc_svs_dataset html print.fit_result html print.mrs_data html qn_states html rats html re_weighting html read_basis html read_ima_coil_dir html read_ima_dyn_dir html read_lcm_coord html read_mrs html read_mrs_tqn html read_pulse_ascii html read_pulse_bruker html read_pulse_pta html read_siemens_txt_hdr html read_tqn_fit html read_tqn_result html recon_imag html recon_imag_vec html recon_twix_2d_mrsi html rectangular_mask html reexports html rep_array_dim html rep_dyn html rep_mrs html resample_basis html resample_img html resample_voi html reslice_to_mrs html reson_table2mrs_data html rm_dyns html scale_amp_molal html scale_amp_molal_pvc html scale_amp_molar html scale_amp_molar2molal_pvc html scale_amp_ratio html scale_amp_ratio_value html scale_amp_water_ratio html scale_basis_amp html scale_basis_from_singlet html scale_mrs_amp html scale_spec html sd html sd.mrs_data html seconds html seq_cpmg_ideal html seq_mega_press_ideal html seq_press_2d_shaped html seq_press_ideal html seq_pulse_acquire html seq_slaser_ideal html seq_spin_echo_ideal html seq_steam_ideal html seq_steam_ideal_cof html seq_steam_ideal_young html set_Ntrans html set_def_acq_paras html set_lcm_cmd html set_lw html set_mask_xy_mat html set_precomp_mode html set_precomp_verbose html set_ref html set_td_pts html set_tqn_cmd html set_tr html shift html shift_basis html sim_basis html sim_basis_1h_brain html sim_basis_1h_brain_press html sim_basis_mm_lip_lcm html sim_basis_tqn html sim_brain_1h html sim_mol html sim_noise html sim_resonances html sim_th_excit_profile html sim_zero html smooth_dyns html sort_basis html spant-package html spant_abfit_benchmark html spant_mpress_drift html spant_sim_fmrs_dataset html spant_simulation_benchmark html spec_decomp html spec_op html spin_sys html spm_pve2categorical html ssp html stackplot html stackplot.fit_result html stackplot.mrs_data html sub_first_dyn html sub_mean_dyns html sub_median_dyns html sum_coils html sum_dyns html sum_mrs html sum_mrs_list html svs_1h_brain_analysis html svs_1h_brain_analysis_dev html svs_1h_brain_batch_analysis html t_test_spec html td2fd html td_conv_filt html tdsr html te html tr html varpro_3_para_opts html varpro_basic_opts html varpro_opts html vec2mrs_data html write_basis html write_basis_tqn html write_mrs html write_mrs_nifti html write_pulse_ascii html zero_fade_spec html zero_higher_orders html zero_td_pts_end html zf html zf_xy html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spant)