* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘spant’ ...
** package ‘spant’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxzVZnL/R.INSTALL2f2962d7f5d65/spant/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c lsei.f -o lsei.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c pnnls.f -o pnnls.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o spant.so init.o lsei.o pnnls.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxzVZnL/R.INSTALL2f2962d7f5d65/spant/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxzVZnL/R.INSTALL2f2962d7f5d65/spant/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxzVZnL/R.INSTALL2f2962d7f5d65/spant/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-spant/00new/spant/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘spant’
finding HTML links ... done
Arg.mrs_data html
Conj.mrs_data html
Im.mrs_data html
Imzap html
Mod.mrs_data html
Ncoils html
Ndyns html
Npts html
Nspec html
Ntrans html
Nx html
Ny html
Nz html
Re.mrs_data html
abfit_opts html
abfit_opts_v1_9_0 html
acquire html
add_noise html
add_noise_spec_snr html
align html
apodise_xy html
append_basis html
append_coils html
append_dyns html
append_regs html
apply_axes html
apply_mrs html
apply_pulse html
array2mrs_data html
auto_phase html
back_extrap_ar html
basis2dyn_mrs_data html
basis2mrs_data html
bbase html
bc_als html
bc_constant html
bc_gauss html
bc_poly html
bc_spline html
beta2lw html
bin_spec html
calc_basis_corr_mat html
calc_basis_crlbs html
calc_coil_noise_cor html
calc_coil_noise_sd html
calc_design_efficiency html
calc_ed_from_lambda html
calc_peak_info_vec html
calc_sd_poly html
calc_spec_diff html
calc_spec_snr html
check_lcm html
check_tqn html
circ_mask html
coherence_filter html
collapse_to_dyns html
comb_coils html
comb_coils_mrsi_gls html
comb_coils_svs_gls html
comb_fit_list_fit_tables html
comb_fit_list_result_tables html
comb_fit_tables html
comb_metab_ref html
conv_mrs html
crop_basis html
crop_spec html
crop_td_pts html
crop_td_pts_end html
crop_td_pts_pot html
crop_xy html
crossprod_3d html
decimate_mrs_fd html
decimate_mrs_td html
deconv_mrs html
def_N html
def_acq_paras html
def_fs html
def_ft html
def_nuc html
def_ref html
dicom_reader html
diff_mrs html
downsample_mrs_fd html
downsample_mrs_td html
dyn_acq_times html
ecc html
elliptical_mask html
est_noise_sd html
fd2td html
fd_conv_filt html
fd_gauss_smo html
find_bids_mrs html
find_mrs_files html
fit_amps html
fit_diags html
fit_mrs html
fit_res2csv html
fit_t1_ti_array html
fit_t1_tr_array html
fit_t2_te_array html
fp_phase html
fp_phase_correct html
fp_scale html
fs html
ft_dyns html
ft_shift html
ft_shift_mat html
gausswin_2d html
gen_F html
gen_F_xy html
gen_I html
gen_baseline_reg html
gen_bold_reg html
gen_conv_reg html
gen_group_reg html
gen_impulse_reg html
gen_poly_reg html
gen_trap_reg html
get_1h_brain_basis_names html
get_1h_brain_basis_paras html
get_1h_brain_basis_paras_v1 html
get_1h_brain_basis_paras_v2 html
get_1h_brain_basis_paras_v3 html
get_1h_braino_basis_names html
get_1h_spectre_basis_names html
get_2d_psf html
get_acq_paras html
get_basis_subset html
get_dyns html
get_even_dyns html
get_fh_dyns html
get_fit_map html
get_fp html
get_guassian_pulse html
get_head_dyns html
get_lcm_cmd html
get_metab html
get_mol_names html
get_mol_paras html
get_mrs_affine html
get_mrsi2d_seg html
get_mrsi_voi html
get_mrsi_voxel html
get_mrsi_voxel_xy_psf html
get_odd_dyns html
get_ref html
get_seg_ind html
get_sh_dyns html
get_slice html
get_spin_num html
get_subset html
get_svs_voi html
get_tail_dyns html
get_td_amp html
get_tqn_cmd html
get_uncoupled_mol html
get_voi_cog html
get_voi_seg html
get_voi_seg_psf html
get_voxel html
glm_spec html
glm_spec_fmrs_fl html
glm_spec_fmrs_group html
glm_spec_group_linhyp html
grid_shift_xy html
gridplot html
gridplot.mrs_data html
hsvd html
hsvd_filt html
hsvd_vec html
hz html
ift_shift html
ift_shift_mat html
image.mrs_data html
img2kspace_xy html
int_spec html
interleave_dyns html
inv_even_dyns html
inv_odd_dyns html
is.def html
is_fd html
kspace2img_xy html
l2_reg html
lb html
lofdc html
lw2alpha html
lw2beta html
make_basis_from_raw html
mask_dyns html
mask_fit_res html
mask_xy html
mask_xy_corners html
mask_xy_ellipse html
mask_xy_mat html
mat2mrs_data html
matexp html
max_mrs html
max_mrs_interp html
mean.list html
mean.mrs_data html
mean_dyn_blocks html
mean_dyn_pairs html
mean_dyns html
mean_mrs_list html
mean_vec_blocks html
median_dyns html
mod_td html
mrs_data2basis html
mrs_data2bids html
mrs_data2mat html
mrs_data2spec_mat html
mrs_data2vec html
mvfftshift html
mvifftshift html
n2coord html
nifti_flip_lr html
one_page_pdf html
ortho3 html
ortho3_inter html
peak_info html
pg_extrap_xy html
phase html
phase_ref_1h_brain html
plot.fit_result html
plot.mrs_data html
plot_bc html
plot_reg html
plot_slice_fit html
plot_slice_fit_inter html
plot_slice_map html
plot_slice_map_inter html
plot_spec_sd html
plot_voi_overlay html
plot_voi_overlay_seg html
ppm html
precomp html
preproc_svs html
preproc_svs_dataset html
print.fit_result html
print.mrs_data html
qn_states html
rats html
re_weighting html
read_basis html
read_ima_coil_dir html
read_ima_dyn_dir html
read_lcm_coord html
read_mrs html
read_mrs_tqn html
read_pulse_ascii html
read_pulse_bruker html
read_pulse_pta html
read_siemens_txt_hdr html
read_tqn_fit html
read_tqn_result html
recon_imag html
recon_imag_vec html
recon_twix_2d_mrsi html
rectangular_mask html
reexports html
rep_array_dim html
rep_dyn html
rep_mrs html
resample_basis html
resample_img html
resample_voi html
reslice_to_mrs html
reson_table2mrs_data html
rm_dyns html
scale_amp_molal html
scale_amp_molal_pvc html
scale_amp_molar html
scale_amp_molar2molal_pvc html
scale_amp_ratio html
scale_amp_ratio_value html
scale_amp_water_ratio html
scale_basis_amp html
scale_basis_from_singlet html
scale_mrs_amp html
scale_spec html
sd html
sd.mrs_data html
seconds html
seq_cpmg_ideal html
seq_mega_press_ideal html
seq_press_2d_shaped html
seq_press_ideal html
seq_pulse_acquire html
seq_slaser_ideal html
seq_spin_echo_ideal html
seq_steam_ideal html
seq_steam_ideal_cof html
seq_steam_ideal_young html
set_Ntrans html
set_def_acq_paras html
set_lcm_cmd html
set_lw html
set_mask_xy_mat html
set_precomp_mode html
set_precomp_verbose html
set_ref html
set_td_pts html
set_tqn_cmd html
set_tr html
shift html
shift_basis html
sim_basis html
sim_basis_1h_brain html
sim_basis_1h_brain_press html
sim_basis_mm_lip_lcm html
sim_basis_tqn html
sim_brain_1h html
sim_mol html
sim_noise html
sim_resonances html
sim_th_excit_profile html
sim_zero html
smooth_dyns html
sort_basis html
spant-package html
spant_abfit_benchmark html
spant_mpress_drift html
spant_sim_fmrs_dataset html
spant_simulation_benchmark html
spec_decomp html
spec_op html
spin_sys html
spm_pve2categorical html
ssp html
stackplot html
stackplot.fit_result html
stackplot.mrs_data html
sub_first_dyn html
sub_mean_dyns html
sub_median_dyns html
sum_coils html
sum_dyns html
sum_mrs html
sum_mrs_list html
svs_1h_brain_analysis html
svs_1h_brain_analysis_dev html
svs_1h_brain_batch_analysis html
t_test_spec html
td2fd html
td_conv_filt html
tdsr html
te html
tr html
varpro_3_para_opts html
varpro_basic_opts html
varpro_opts html
vec2mrs_data html
write_basis html
write_basis_tqn html
write_mrs html
write_mrs_nifti html
write_pulse_ascii html
zero_fade_spec html
zero_higher_orders html
zero_td_pts_end html
zf html
zf_xy html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spant)